Results 21 - 40 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29430 | 3' | -64.1 | NC_006151.1 | + | 58086 | 0.66 | 0.540532 |
Target: 5'- uCGCGGGCGAgcucgggccccAGGAagGCgaagacgGGCgGGGUCg- -3' miRNA: 3'- -GCGCCCGCU-----------UCCU--CGa------CCG-CCCGGac -5' |
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29430 | 3' | -64.1 | NC_006151.1 | + | 82883 | 0.66 | 0.540532 |
Target: 5'- gCGCGGGUgGGAGGGGCga--GGGUCa- -3' miRNA: 3'- -GCGCCCG-CUUCCUCGaccgCCCGGac -5' |
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29430 | 3' | -64.1 | NC_006151.1 | + | 4336 | 0.66 | 0.540532 |
Target: 5'- gCGCGgcGGCGAAGGcGGCgcggacgcgGGCgcagaGGGCCUc -3' miRNA: 3'- -GCGC--CCGCUUCC-UCGa--------CCG-----CCCGGAc -5' |
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29430 | 3' | -64.1 | NC_006151.1 | + | 118223 | 0.66 | 0.539583 |
Target: 5'- gGCGGGCGcccGGAccaccggGCUcggcGGCGGGCUc- -3' miRNA: 3'- gCGCCCGCuu-CCU-------CGA----CCGCCCGGac -5' |
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29430 | 3' | -64.1 | NC_006151.1 | + | 18048 | 0.66 | 0.539583 |
Target: 5'- uGgGGGCGcagcGGGGAGCggGGUcccuuggGGGCCa- -3' miRNA: 3'- gCgCCCGC----UUCCUCGa-CCG-------CCCGGac -5' |
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29430 | 3' | -64.1 | NC_006151.1 | + | 8297 | 0.66 | 0.537685 |
Target: 5'- gCGCGGGCGccgcgucccgccccGAgcccccGGGGC-GcGCGGGCCUc -3' miRNA: 3'- -GCGCCCGC--------------UU------CCUCGaC-CGCCCGGAc -5' |
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29430 | 3' | -64.1 | NC_006151.1 | + | 131027 | 0.66 | 0.531064 |
Target: 5'- aGCGGGUGAAGGccucccGCUcGUcgGGGCCg- -3' miRNA: 3'- gCGCCCGCUUCCu-----CGAcCG--CCCGGac -5' |
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29430 | 3' | -64.1 | NC_006151.1 | + | 96813 | 0.66 | 0.531064 |
Target: 5'- gCGCGGGCuuuu-AGC-GGCGGGCCc- -3' miRNA: 3'- -GCGCCCGcuuccUCGaCCGCCCGGac -5' |
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29430 | 3' | -64.1 | NC_006151.1 | + | 121449 | 0.66 | 0.531064 |
Target: 5'- uCGCuGGUGcccgcGGAGCUGGgGGGCa-- -3' miRNA: 3'- -GCGcCCGCuu---CCUCGACCgCCCGgac -5' |
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29430 | 3' | -64.1 | NC_006151.1 | + | 11331 | 0.66 | 0.531064 |
Target: 5'- gCGCGGGCGAuaccGC--GCGGGCCg- -3' miRNA: 3'- -GCGCCCGCUuccuCGacCGCCCGGac -5' |
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29430 | 3' | -64.1 | NC_006151.1 | + | 6444 | 0.66 | 0.534844 |
Target: 5'- gGCGGcCGGAGGAGgagaagaagaagacuCuucucUGGCGGGCCg- -3' miRNA: 3'- gCGCCcGCUUCCUC---------------G-----ACCGCCCGGac -5' |
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29430 | 3' | -64.1 | NC_006151.1 | + | 22833 | 0.66 | 0.534844 |
Target: 5'- gCGCGaGGCGAgcgcgcugcccaggaAgcccaGGAGCagGGCGGGgCUGc -3' miRNA: 3'- -GCGC-CCGCU---------------U-----CCUCGa-CCGCCCgGAC- -5' |
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29430 | 3' | -64.1 | NC_006151.1 | + | 127287 | 0.67 | 0.475686 |
Target: 5'- uGaCGGGuCGggGGuGCUGGUacaGGCCg- -3' miRNA: 3'- gC-GCCC-GCuuCCuCGACCGc--CCGGac -5' |
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29430 | 3' | -64.1 | NC_006151.1 | + | 17279 | 0.67 | 0.475686 |
Target: 5'- gGCGGGCugauacGGAGGGGCUcccCGGGCUUc -3' miRNA: 3'- gCGCCCG------CUUCCUCGAcc-GCCCGGAc -5' |
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29430 | 3' | -64.1 | NC_006151.1 | + | 18417 | 0.67 | 0.475686 |
Target: 5'- cCGcCGGGgGAGGaGGGCcgccGGCGGGCg-- -3' miRNA: 3'- -GC-GCCCgCUUC-CUCGa---CCGCCCGgac -5' |
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29430 | 3' | -64.1 | NC_006151.1 | + | 78582 | 0.67 | 0.475686 |
Target: 5'- gCGaCGGGCcu-GGAGCUGGCGG-UCa- -3' miRNA: 3'- -GC-GCCCGcuuCCUCGACCGCCcGGac -5' |
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29430 | 3' | -64.1 | NC_006151.1 | + | 27321 | 0.67 | 0.484725 |
Target: 5'- gGCGGGgGAcgGGGGGCUGcucccCGGGaCCg- -3' miRNA: 3'- gCGCCCgCU--UCCUCGACc----GCCC-GGac -5' |
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29430 | 3' | -64.1 | NC_006151.1 | + | 86580 | 0.67 | 0.484725 |
Target: 5'- gCGCGGGCGcgcuccGAGcuGCUGGCGcGcGCCg- -3' miRNA: 3'- -GCGCCCGC------UUCcuCGACCGC-C-CGGac -5' |
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29430 | 3' | -64.1 | NC_006151.1 | + | 33236 | 0.67 | 0.484725 |
Target: 5'- gGCGGGCGGgaggggguccGGGGGaagGGUGGGgCg- -3' miRNA: 3'- gCGCCCGCU----------UCCUCga-CCGCCCgGac -5' |
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29430 | 3' | -64.1 | NC_006151.1 | + | 54918 | 0.67 | 0.475686 |
Target: 5'- gCGCGugcacGGCG-AGGuGCUGGCGuGCCa- -3' miRNA: 3'- -GCGC-----CCGCuUCCuCGACCGCcCGGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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