miRNA display CGI


Results 21 - 40 of 134 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29430 3' -64.1 NC_006151.1 + 10087 0.73 0.214559
Target:  5'- gGCGGGCGGAGGAa--GGCGGGUg-- -3'
miRNA:   3'- gCGCCCGCUUCCUcgaCCGCCCGgac -5'
29430 3' -64.1 NC_006151.1 + 10978 0.66 0.512316
Target:  5'- gGUGGGUGucacgguGGAGCgGGCcggGGGCCc- -3'
miRNA:   3'- gCGCCCGCuu-----CCUCGaCCG---CCCGGac -5'
29430 3' -64.1 NC_006151.1 + 11331 0.66 0.531064
Target:  5'- gCGCGGGCGAuaccGC--GCGGGCCg- -3'
miRNA:   3'- -GCGCCCGCUuccuCGacCGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 11737 0.69 0.366845
Target:  5'- gCGgGGGUGAGGGGGagggGuGCGGGCgaGu -3'
miRNA:   3'- -GCgCCCGCUUCCUCga--C-CGCCCGgaC- -5'
29430 3' -64.1 NC_006151.1 + 11794 0.72 0.246679
Target:  5'- gCGUGGGCGAgAGGGGCggGGUGGGgUg- -3'
miRNA:   3'- -GCGCCCGCU-UCCUCGa-CCGCCCgGac -5'
29430 3' -64.1 NC_006151.1 + 12401 0.69 0.374592
Target:  5'- aGCGGGaacuggaGAGGGGGCUGGgugGGGUgaGg -3'
miRNA:   3'- gCGCCCg------CUUCCUCGACCg--CCCGgaC- -5'
29430 3' -64.1 NC_006151.1 + 13087 0.69 0.336254
Target:  5'- aGCGGGCGuccgggaAGGGAGaggucgcGGCGGGUCa- -3'
miRNA:   3'- gCGCCCGC-------UUCCUCga-----CCGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 17279 0.67 0.475686
Target:  5'- gGCGGGCugauacGGAGGGGCUcccCGGGCUUc -3'
miRNA:   3'- gCGCCCG------CUUCCUCGAcc-GCCCGGAc -5'
29430 3' -64.1 NC_006151.1 + 18048 0.66 0.539583
Target:  5'- uGgGGGCGcagcGGGGAGCggGGUcccuuggGGGCCa- -3'
miRNA:   3'- gCgCCCGC----UUCCUCGa-CCG-------CCCGGac -5'
29430 3' -64.1 NC_006151.1 + 18167 0.71 0.252404
Target:  5'- gGCGGGCauGucGGAauGCgGGCGGGCCg- -3'
miRNA:   3'- gCGCCCG--CuuCCU--CGaCCGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 18212 0.67 0.466732
Target:  5'- aGCgGGGCGGgcauucaacAGGcGGCUGGCGGucacGCCa- -3'
miRNA:   3'- gCG-CCCGCU---------UCC-UCGACCGCC----CGGac -5'
29430 3' -64.1 NC_006151.1 + 18417 0.67 0.475686
Target:  5'- cCGcCGGGgGAGGaGGGCcgccGGCGGGCg-- -3'
miRNA:   3'- -GC-GCCCgCUUC-CUCGa---CCGCCCGgac -5'
29430 3' -64.1 NC_006151.1 + 20114 0.71 0.264183
Target:  5'- gGCGccccGGCGAcGGGGCUGGgGGGCg-- -3'
miRNA:   3'- gCGC----CCGCUuCCUCGACCgCCCGgac -5'
29430 3' -64.1 NC_006151.1 + 21333 0.68 0.431822
Target:  5'- gGCGcGGCGggGGuccgcGGCUGgaacggcuccGCGGGCUg- -3'
miRNA:   3'- gCGC-CCGCuuCC-----UCGAC----------CGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 21399 0.75 0.153354
Target:  5'- gGCgGGGCGAAGGGGCggugcGGCgucucGGGCCUc -3'
miRNA:   3'- gCG-CCCGCUUCCUCGa----CCG-----CCCGGAc -5'
29430 3' -64.1 NC_006151.1 + 21505 0.71 0.270238
Target:  5'- gCGCGGGCGucaccGGGGCgGGCucGGGCUUc -3'
miRNA:   3'- -GCGCCCGCuu---CCUCGaCCG--CCCGGAc -5'
29430 3' -64.1 NC_006151.1 + 22079 0.67 0.449089
Target:  5'- aCGUGGGCGcgguacguGGGccGCcGGUGGGCCa- -3'
miRNA:   3'- -GCGCCCGCu-------UCCu-CGaCCGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 22269 0.71 0.264183
Target:  5'- aCGCGGGCGggGGgaaGGUcgGcGCGGGCa-- -3'
miRNA:   3'- -GCGCCCGCuuCC---UCGa-C-CGCCCGgac -5'
29430 3' -64.1 NC_006151.1 + 22515 0.67 0.466732
Target:  5'- gGgGGaaucGCGggGGAGUcgGGCGgGGCCg- -3'
miRNA:   3'- gCgCC----CGCuuCCUCGa-CCGC-CCGGac -5'
29430 3' -64.1 NC_006151.1 + 22833 0.66 0.534844
Target:  5'- gCGCGaGGCGAgcgcgcugcccaggaAgcccaGGAGCagGGCGGGgCUGc -3'
miRNA:   3'- -GCGC-CCGCU---------------U-----CCUCGa-CCGCCCgGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.