miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29430 3' -64.1 NC_006151.1 + 729 0.68 0.398486
Target:  5'- cCGCGGGCGggGGcuuccGCUccGCGGcGCCc- -3'
miRNA:   3'- -GCGCCCGCuuCCu----CGAc-CGCC-CGGac -5'
29430 3' -64.1 NC_006151.1 + 2537 0.66 0.493845
Target:  5'- aGC--GCGGAGc-GCUGGCGGGCCa- -3'
miRNA:   3'- gCGccCGCUUCcuCGACCGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 2709 0.72 0.219652
Target:  5'- gGCGGGCGAAGGAgGCcuccacGCGGGCg-- -3'
miRNA:   3'- gCGCCCGCUUCCU-CGac----CGCCCGgac -5'
29430 3' -64.1 NC_006151.1 + 3132 0.67 0.466732
Target:  5'- gGcCGGGCGc-GGGGCgcccucGGCGGGCUc- -3'
miRNA:   3'- gC-GCCCGCuuCCUCGa-----CCGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 3555 0.68 0.398486
Target:  5'- aGCGGGCccgaguccGAGGGAGC-GGCgcuugcgccgGGGCCc- -3'
miRNA:   3'- gCGCCCG--------CUUCCUCGaCCG----------CCCGGac -5'
29430 3' -64.1 NC_006151.1 + 3744 0.75 0.153354
Target:  5'- gGC-GGCGggGGAGCUGGCGuaGCCg- -3'
miRNA:   3'- gCGcCCGCuuCCUCGACCGCc-CGGac -5'
29430 3' -64.1 NC_006151.1 + 3818 0.66 0.521657
Target:  5'- aGCuGGacuuGGuGCUGGCGGGgCUGg -3'
miRNA:   3'- gCGcCCgcuuCCuCGACCGCCCgGAC- -5'
29430 3' -64.1 NC_006151.1 + 4227 0.71 0.252404
Target:  5'- gCGCGGGCGGGcgcgggcagccGGAGCgGGCaGGGCa-- -3'
miRNA:   3'- -GCGCCCGCUU-----------CCUCGaCCG-CCCGgac -5'
29430 3' -64.1 NC_006151.1 + 4336 0.66 0.540532
Target:  5'- gCGCGgcGGCGAAGGcGGCgcggacgcgGGCgcagaGGGCCUc -3'
miRNA:   3'- -GCGC--CCGCUUCC-UCGa--------CCG-----CCCGGAc -5'
29430 3' -64.1 NC_006151.1 + 4995 0.69 0.366845
Target:  5'- aGCGGcgcuuccuGCGcGGGGGCcgGGCGGGCUc- -3'
miRNA:   3'- gCGCC--------CGCuUCCUCGa-CCGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 5049 0.71 0.252404
Target:  5'- cCGC-GGCGGAGGAGgaGGCGGaggagGCCg- -3'
miRNA:   3'- -GCGcCCGCUUCCUCgaCCGCC-----CGGac -5'
29430 3' -64.1 NC_006151.1 + 5126 0.76 0.125923
Target:  5'- gCGCGGGCGAGuGGGGCgc-CGGGCCg- -3'
miRNA:   3'- -GCGCCCGCUU-CCUCGaccGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 5265 0.72 0.235551
Target:  5'- gGgGGGCGGAGG-GC-GaGCGGGCCg- -3'
miRNA:   3'- gCgCCCGCUUCCuCGaC-CGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 5659 0.7 0.322722
Target:  5'- gGC-GGCGggGGAgGCUGgggaaGCGGGCCc- -3'
miRNA:   3'- gCGcCCGCuuCCU-CGAC-----CGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 6444 0.66 0.534844
Target:  5'- gGCGGcCGGAGGAGgagaagaagaagacuCuucucUGGCGGGCCg- -3'
miRNA:   3'- gCGCCcGCUUCCUC---------------G-----ACCGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 8004 0.69 0.351687
Target:  5'- gGCGGGCGGgaGGGGGCgcgagaccGGCucGGCCUc -3'
miRNA:   3'- gCGCCCGCU--UCCUCGa-------CCGc-CCGGAc -5'
29430 3' -64.1 NC_006151.1 + 8038 0.66 0.531064
Target:  5'- uCGuCGGGagaGAGGGAGUUGGgGGGag-Gg -3'
miRNA:   3'- -GC-GCCCg--CUUCCUCGACCgCCCggaC- -5'
29430 3' -64.1 NC_006151.1 + 8074 0.69 0.374592
Target:  5'- aGauGGCGAcGGGGCgUGGCGgGGCgUGg -3'
miRNA:   3'- gCgcCCGCUuCCUCG-ACCGC-CCGgAC- -5'
29430 3' -64.1 NC_006151.1 + 8150 0.69 0.342074
Target:  5'- gGCGGGUGcaAAGGGGCggGGCccaaaauggaccucGGGCCg- -3'
miRNA:   3'- gCGCCCGC--UUCCUCGa-CCG--------------CCCGGac -5'
29430 3' -64.1 NC_006151.1 + 8297 0.66 0.537685
Target:  5'- gCGCGGGCGccgcgucccgccccGAgcccccGGGGC-GcGCGGGCCUc -3'
miRNA:   3'- -GCGCCCGC--------------UU------CCUCGaC-CGCCCGGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.