miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29430 3' -64.1 NC_006151.1 + 141740 0.69 0.336978
Target:  5'- --aGGGCGGAGGGGCgcggGGCGcGcGCCc- -3'
miRNA:   3'- gcgCCCGCUUCCUCGa---CCGC-C-CGGac -5'
29430 3' -64.1 NC_006151.1 + 141646 0.68 0.390413
Target:  5'- gGCGGcGCGgcGGGGCcccGCGGGCUc- -3'
miRNA:   3'- gCGCC-CGCuuCCUCGac-CGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 141313 0.72 0.223278
Target:  5'- aCGCGGGCGGguccGGGAuggucaccgcguacGCgGGCGGGUCa- -3'
miRNA:   3'- -GCGCCCGCU----UCCU--------------CGaCCGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 139642 0.66 0.503044
Target:  5'- gCGCcGGCGcGGGGGUcgcGGCGGGCg-- -3'
miRNA:   3'- -GCGcCCGCuUCCUCGa--CCGCCCGgac -5'
29430 3' -64.1 NC_006151.1 + 135106 0.77 0.111161
Target:  5'- gGCGGGCGgcGGuAGCgcgcggGGCGGGCUg- -3'
miRNA:   3'- gCGCCCGCuuCC-UCGa-----CCGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 134994 0.68 0.423335
Target:  5'- gGCGGGCGcgucuuggcGGGGGCgcgGGgGGGCa-- -3'
miRNA:   3'- gCGCCCGCu--------UCCUCGa--CCgCCCGgac -5'
29430 3' -64.1 NC_006151.1 + 133486 0.66 0.516044
Target:  5'- cCGCGGGCGucaccuuggcggcgcGGGGGGCgcgGGaGGaGCCg- -3'
miRNA:   3'- -GCGCCCGC---------------UUCCUCGa--CCgCC-CGGac -5'
29430 3' -64.1 NC_006151.1 + 131900 0.68 0.414949
Target:  5'- cCGaGGGCGAcGGGGGC-GGCagcaGGGCCUc -3'
miRNA:   3'- -GCgCCCGCU-UCCUCGaCCG----CCCGGAc -5'
29430 3' -64.1 NC_006151.1 + 131714 0.72 0.246679
Target:  5'- uCGCGGGgGAugaggugguaGGcGGGgUGGCGGGCCc- -3'
miRNA:   3'- -GCGCCCgCU----------UC-CUCgACCGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 131027 0.66 0.531064
Target:  5'- aGCGGGUGAAGGccucccGCUcGUcgGGGCCg- -3'
miRNA:   3'- gCGCCCGCUUCCu-----CGAcCG--CCCGGac -5'
29430 3' -64.1 NC_006151.1 + 130959 0.71 0.282681
Target:  5'- gCGCGGGCGcGGGGGCcGGUaccccGGCCg- -3'
miRNA:   3'- -GCGCCCGCuUCCUCGaCCGc----CCGGac -5'
29430 3' -64.1 NC_006151.1 + 130932 0.69 0.374592
Target:  5'- cCGCGGGgGcGGGGGC-GGCGGGg--- -3'
miRNA:   3'- -GCGCCCgCuUCCUCGaCCGCCCggac -5'
29430 3' -64.1 NC_006151.1 + 127330 0.74 0.164971
Target:  5'- cCGCGGGCGggGGuGCUGGUacacGuGGUCg- -3'
miRNA:   3'- -GCGCCCGCuuCCuCGACCG----C-CCGGac -5'
29430 3' -64.1 NC_006151.1 + 127287 0.67 0.475686
Target:  5'- uGaCGGGuCGggGGuGCUGGUacaGGCCg- -3'
miRNA:   3'- gC-GCCC-GCuuCCuCGACCGc--CCGGac -5'
29430 3' -64.1 NC_006151.1 + 126148 0.69 0.35921
Target:  5'- -uCGGGCuGcuGGuGCUGGCcGGCCUGg -3'
miRNA:   3'- gcGCCCG-CuuCCuCGACCGcCCGGAC- -5'
29430 3' -64.1 NC_006151.1 + 123482 0.67 0.446475
Target:  5'- aCGUGGGCcuccugccgcaccuGAaggAGGAGCUGGCGcGCUUc -3'
miRNA:   3'- -GCGCCCG--------------CU---UCCUCGACCGCcCGGAc -5'
29430 3' -64.1 NC_006151.1 + 123056 0.66 0.540532
Target:  5'- cCGCGGcgcugcGCGAcgccGAGCgccGGCGGcGCCUGu -3'
miRNA:   3'- -GCGCC------CGCUuc--CUCGa--CCGCC-CGGAC- -5'
29430 3' -64.1 NC_006151.1 + 122392 0.68 0.431822
Target:  5'- cCGCGGGCGc--GcGCUGGCGGcGCUc- -3'
miRNA:   3'- -GCGCCCGCuucCuCGACCGCC-CGGac -5'
29430 3' -64.1 NC_006151.1 + 122223 0.68 0.406665
Target:  5'- gCGCGGuGUGcuucGAGGAGCUGuGCGugacGGCCa- -3'
miRNA:   3'- -GCGCC-CGC----UUCCUCGAC-CGC----CCGGac -5'
29430 3' -64.1 NC_006151.1 + 121913 0.74 0.177373
Target:  5'- gCGCGGGcCGAGGGGgaccgcguGCUGG-GGGCgCUGg -3'
miRNA:   3'- -GCGCCC-GCUUCCU--------CGACCgCCCG-GAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.