miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29430 3' -64.1 NC_006151.1 + 92855 1.07 0.000644
Target:  5'- aCGCGGGCGAAGGAGCUGGCGGGCCUGu -3'
miRNA:   3'- -GCGCCCGCUUCCUCGACCGCCCGGAC- -5'
29430 3' -64.1 NC_006151.1 + 30819 0.78 0.090871
Target:  5'- aCGCGGGCGGgAGGAGUUGcGUGGGCg-- -3'
miRNA:   3'- -GCGCCCGCU-UCCUCGAC-CGCCCGgac -5'
29430 3' -64.1 NC_006151.1 + 121663 0.77 0.103098
Target:  5'- gGCGGGCGGaggggGGGAGC-GaGCGGGCCg- -3'
miRNA:   3'- gCGCCCGCU-----UCCUCGaC-CGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 135106 0.77 0.111161
Target:  5'- gGCGGGCGgcGGuAGCgcgcggGGCGGGCUg- -3'
miRNA:   3'- gCGCCCGCuuCC-UCGa-----CCGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 74324 0.76 0.116569
Target:  5'- uGCGGGUGcAGGGGCUGGUucucguuccgcacGGGCCg- -3'
miRNA:   3'- gCGCCCGCuUCCUCGACCG-------------CCCGGac -5'
29430 3' -64.1 NC_006151.1 + 88822 0.76 0.119812
Target:  5'- gGUGGGCGAGGGAggcGUUGGCGGaGCUg- -3'
miRNA:   3'- gCGCCCGCUUCCU---CGACCGCC-CGGac -5'
29430 3' -64.1 NC_006151.1 + 71562 0.76 0.122832
Target:  5'- gGgGGGCGAGGGGGacgGGCGGGCa-- -3'
miRNA:   3'- gCgCCCGCUUCCUCga-CCGCCCGgac -5'
29430 3' -64.1 NC_006151.1 + 5126 0.76 0.125923
Target:  5'- gCGCGGGCGAGuGGGGCgc-CGGGCCg- -3'
miRNA:   3'- -GCGCCCGCUU-CCUCGaccGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 91747 0.76 0.129086
Target:  5'- gGCGGGCGAGcGGGCUcgGGCGGGCg-- -3'
miRNA:   3'- gCGCCCGCUUcCUCGA--CCGCCCGgac -5'
29430 3' -64.1 NC_006151.1 + 33062 0.75 0.135632
Target:  5'- cCGCGGGUggcaugagacgGAGGGGGCgagGGCGGGCg-- -3'
miRNA:   3'- -GCGCCCG-----------CUUCCUCGa--CCGCCCGgac -5'
29430 3' -64.1 NC_006151.1 + 26328 0.75 0.146026
Target:  5'- gCGCgGGGCGAGgcccgccucacGGGGCggcGGCGGGCCg- -3'
miRNA:   3'- -GCG-CCCGCUU-----------CCUCGa--CCGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 82682 0.75 0.149649
Target:  5'- cCGCGGGCGAGGGcGGC-GGCccccgcgaGGGCCa- -3'
miRNA:   3'- -GCGCCCGCUUCC-UCGaCCG--------CCCGGac -5'
29430 3' -64.1 NC_006151.1 + 21399 0.75 0.153354
Target:  5'- gGCgGGGCGAAGGGGCggugcGGCgucucGGGCCUc -3'
miRNA:   3'- gCG-CCCGCUUCCUCGa----CCG-----CCCGGAc -5'
29430 3' -64.1 NC_006151.1 + 3744 0.75 0.153354
Target:  5'- gGC-GGCGggGGAGCUGGCGuaGCCg- -3'
miRNA:   3'- gCGcCCGCuuCCUCGACCGCc-CGGac -5'
29430 3' -64.1 NC_006151.1 + 127330 0.74 0.164971
Target:  5'- cCGCGGGCGggGGuGCUGGUacacGuGGUCg- -3'
miRNA:   3'- -GCGCCCGCuuCCuCGACCG----C-CCGGac -5'
29430 3' -64.1 NC_006151.1 + 27004 0.74 0.173149
Target:  5'- -uCGGGCGA--GAGCUGGagcaGGGCCUGc -3'
miRNA:   3'- gcGCCCGCUucCUCGACCg---CCCGGAC- -5'
29430 3' -64.1 NC_006151.1 + 121913 0.74 0.177373
Target:  5'- gCGCGGGcCGAGGGGgaccgcguGCUGG-GGGCgCUGg -3'
miRNA:   3'- -GCGCCC-GCUUCCU--------CGACCgCCCG-GAC- -5'
29430 3' -64.1 NC_006151.1 + 30692 0.73 0.186095
Target:  5'- gGCGGGCGggGGGGUgucggGGCcGGGUUc- -3'
miRNA:   3'- gCGCCCGCuuCCUCGa----CCG-CCCGGac -5'
29430 3' -64.1 NC_006151.1 + 112053 0.73 0.190596
Target:  5'- gGCGGGCGgcGGcGGUggUGGUGGGgCUGg -3'
miRNA:   3'- gCGCCCGCuuCC-UCG--ACCGCCCgGAC- -5'
29430 3' -64.1 NC_006151.1 + 66934 0.73 0.204678
Target:  5'- gCGgGGGCGAGGGcaaaGGCggcGGCGGGCg-- -3'
miRNA:   3'- -GCgCCCGCUUCC----UCGa--CCGCCCGgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.