miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29430 3' -64.1 NC_006151.1 + 10087 0.73 0.214559
Target:  5'- gGCGGGCGGAGGAa--GGCGGGUg-- -3'
miRNA:   3'- gCGCCCGCUUCCUcgaCCGCCCGgac -5'
29430 3' -64.1 NC_006151.1 + 2709 0.72 0.219652
Target:  5'- gGCGGGCGAAGGAgGCcuccacGCGGGCg-- -3'
miRNA:   3'- gCGCCCGCUUCCU-CGac----CGCCCGgac -5'
29430 3' -64.1 NC_006151.1 + 141313 0.72 0.223278
Target:  5'- aCGCGGGCGGguccGGGAuggucaccgcguacGCgGGCGGGUCa- -3'
miRNA:   3'- -GCGCCCGCU----UCCU--------------CGaCCGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 100808 0.72 0.230147
Target:  5'- gGCGGGCGAcGGcGa-GGCGGGCCc- -3'
miRNA:   3'- gCGCCCGCUuCCuCgaCCGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 5265 0.72 0.235551
Target:  5'- gGgGGGCGGAGG-GC-GaGCGGGCCg- -3'
miRNA:   3'- gCgCCCGCUUCCuCGaC-CGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 111278 0.72 0.241061
Target:  5'- gCGCGGGCGggGG-GUacGCGG-CCUGg -3'
miRNA:   3'- -GCGCCCGCuuCCuCGacCGCCcGGAC- -5'
29430 3' -64.1 NC_006151.1 + 11794 0.72 0.246679
Target:  5'- gCGUGGGCGAgAGGGGCggGGUGGGgUg- -3'
miRNA:   3'- -GCGCCCGCU-UCCUCGa-CCGCCCgGac -5'
29430 3' -64.1 NC_006151.1 + 131714 0.72 0.246679
Target:  5'- uCGCGGGgGAugaggugguaGGcGGGgUGGCGGGCCc- -3'
miRNA:   3'- -GCGCCCgCU----------UC-CUCgACCGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 84394 0.71 0.252404
Target:  5'- gGaCGGGCG-GGGAGCgGGUGGGCg-- -3'
miRNA:   3'- gC-GCCCGCuUCCUCGaCCGCCCGgac -5'
29430 3' -64.1 NC_006151.1 + 5049 0.71 0.252404
Target:  5'- cCGC-GGCGGAGGAGgaGGCGGaggagGCCg- -3'
miRNA:   3'- -GCGcCCGCUUCCUCgaCCGCC-----CGGac -5'
29430 3' -64.1 NC_006151.1 + 18167 0.71 0.252404
Target:  5'- gGCGGGCauGucGGAauGCgGGCGGGCCg- -3'
miRNA:   3'- gCGCCCG--CuuCCU--CGaCCGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 4227 0.71 0.252404
Target:  5'- gCGCGGGCGGGcgcgggcagccGGAGCgGGCaGGGCa-- -3'
miRNA:   3'- -GCGCCCGCUU-----------CCUCGaCCG-CCCGgac -5'
29430 3' -64.1 NC_006151.1 + 111665 0.71 0.258239
Target:  5'- uCGCGGcCaGGGGGGCgucGGCGGGCCg- -3'
miRNA:   3'- -GCGCCcGcUUCCUCGa--CCGCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 41492 0.71 0.264183
Target:  5'- cCGCGuGGCGcgaGGGGAGCcaauggGGCGGGCg-- -3'
miRNA:   3'- -GCGC-CCGC---UUCCUCGa-----CCGCCCGgac -5'
29430 3' -64.1 NC_006151.1 + 22269 0.71 0.264183
Target:  5'- aCGCGGGCGggGGgaaGGUcgGcGCGGGCa-- -3'
miRNA:   3'- -GCGCCCGCuuCC---UCGa-C-CGCCCGgac -5'
29430 3' -64.1 NC_006151.1 + 20114 0.71 0.264183
Target:  5'- gGCGccccGGCGAcGGGGCUGGgGGGCg-- -3'
miRNA:   3'- gCGC----CCGCUuCCUCGACCgCCCGgac -5'
29430 3' -64.1 NC_006151.1 + 21505 0.71 0.270238
Target:  5'- gCGCGGGCGucaccGGGGCgGGCucGGGCUUc -3'
miRNA:   3'- -GCGCCCGCuu---CCUCGaCCG--CCCGGAc -5'
29430 3' -64.1 NC_006151.1 + 31656 0.71 0.275782
Target:  5'- gCGCGGG-GAGGGAGgaGGgcggaggaagggcCGGGCCg- -3'
miRNA:   3'- -GCGCCCgCUUCCUCgaCC-------------GCCCGGac -5'
29430 3' -64.1 NC_006151.1 + 45595 0.71 0.276403
Target:  5'- aGgGGGCgGggGGAGCcccgacggGGCGGGCg-- -3'
miRNA:   3'- gCgCCCG-CuuCCUCGa-------CCGCCCGgac -5'
29430 3' -64.1 NC_006151.1 + 72932 0.71 0.277026
Target:  5'- gGCGGGCGugaagaacuugaagcAGGGGCUguaGGcCGGGCCg- -3'
miRNA:   3'- gCGCCCGCu--------------UCCUCGA---CC-GCCCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.