miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29430 5' -58.2 NC_006151.1 + 87438 0.68 0.723002
Target:  5'- -cCGUGCCCgccgccgccgcggCCGCCCCCGcuccGGCU-CCAg -3'
miRNA:   3'- guGUAUGGG-------------GGCGGGGGC----UUGAuGGU- -5'
29430 5' -58.2 NC_006151.1 + 34258 0.68 0.714169
Target:  5'- gCGCcccCUCCCGCCcgCCCGAGgUACCGc -3'
miRNA:   3'- -GUGuauGGGGGCGG--GGGCUUgAUGGU- -5'
29430 5' -58.2 NC_006151.1 + 113742 0.68 0.713185
Target:  5'- aGCGUACCagcuguuCCCGCCgaagcccacuCCCGAGCcGCCu -3'
miRNA:   3'- gUGUAUGG-------GGGCGG----------GGGCUUGaUGGu -5'
29430 5' -58.2 NC_006151.1 + 101810 0.68 0.7033
Target:  5'- ----cGCCCCCGUCCCCGccguccccgucucGGCgGCCGc -3'
miRNA:   3'- guguaUGGGGGCGGGGGC-------------UUGaUGGU- -5'
29430 5' -58.2 NC_006151.1 + 9180 0.68 0.702308
Target:  5'- cCGCccGCCCUCGCCCCCuccgucucaUGCCAc -3'
miRNA:   3'- -GUGuaUGGGGGCGGGGGcuug-----AUGGU- -5'
29430 5' -58.2 NC_006151.1 + 11506 0.68 0.694353
Target:  5'- uGC-UGCCCCCGCCCCgcccgCGGcACU-CCGg -3'
miRNA:   3'- gUGuAUGGGGGCGGGG-----GCU-UGAuGGU- -5'
29430 5' -58.2 NC_006151.1 + 14940 0.68 0.694353
Target:  5'- aGCAgcCCCCCGuCCCCCGccucGACccCCAg -3'
miRNA:   3'- gUGUauGGGGGC-GGGGGC----UUGauGGU- -5'
29430 5' -58.2 NC_006151.1 + 90608 0.68 0.694353
Target:  5'- gGCGUgGCCCCCuuCCCCCGAgGCgGCCc -3'
miRNA:   3'- gUGUA-UGGGGGc-GGGGGCU-UGaUGGu -5'
29430 5' -58.2 NC_006151.1 + 87324 0.68 0.694353
Target:  5'- -cCGUGCCggCGCUCCCGGGcCUGCCGg -3'
miRNA:   3'- guGUAUGGggGCGGGGGCUU-GAUGGU- -5'
29430 5' -58.2 NC_006151.1 + 104162 0.68 0.684364
Target:  5'- cCGCGgagcUGCgCCCCGCCgCCGAGCgcgcgcucggcGCCAa -3'
miRNA:   3'- -GUGU----AUG-GGGGCGGgGGCUUGa----------UGGU- -5'
29430 5' -58.2 NC_006151.1 + 11572 0.68 0.683362
Target:  5'- gACAccCCCCCGCCCgCCGGgggagGCUucccggaACCAg -3'
miRNA:   3'- gUGUauGGGGGCGGG-GGCU-----UGA-------UGGU- -5'
29430 5' -58.2 NC_006151.1 + 134403 0.68 0.674333
Target:  5'- gACAU-CCCCUGCCCgCgCGAgcugguGCUGCCc -3'
miRNA:   3'- gUGUAuGGGGGCGGG-G-GCU------UGAUGGu -5'
29430 5' -58.2 NC_006151.1 + 551 0.68 0.674333
Target:  5'- gCGCcgGCCCCUuccgcuuCCCCCGGACgugacGCCGg -3'
miRNA:   3'- -GUGuaUGGGGGc------GGGGGCUUGa----UGGU- -5'
29430 5' -58.2 NC_006151.1 + 614 0.68 0.674333
Target:  5'- gCGCcgGCCCCUuccgcuuCCCCCGGACgugacGCCGg -3'
miRNA:   3'- -GUGuaUGGGGGc------GGGGGCUUGa----UGGU- -5'
29430 5' -58.2 NC_006151.1 + 25597 0.68 0.674333
Target:  5'- gACu--CCCCCGgacuCCCCCGGACUcCCc -3'
miRNA:   3'- gUGuauGGGGGC----GGGGGCUUGAuGGu -5'
29430 5' -58.2 NC_006151.1 + 25627 0.68 0.674333
Target:  5'- gACu--CCCCCGgacuCCCCCGGACUcCCc -3'
miRNA:   3'- gUGuauGGGGGC----GGGGGCUUGAuGGu -5'
29430 5' -58.2 NC_006151.1 + 49125 0.68 0.674333
Target:  5'- gACGUACCcgacgcugCCCGCgCCCGcccacGGCUGCCu -3'
miRNA:   3'- gUGUAUGG--------GGGCGgGGGC-----UUGAUGGu -5'
29430 5' -58.2 NC_006151.1 + 10867 0.68 0.674333
Target:  5'- ----cGCCCCgGCCCCCcGGCUugguGCCGg -3'
miRNA:   3'- guguaUGGGGgCGGGGGcUUGA----UGGU- -5'
29430 5' -58.2 NC_006151.1 + 44976 0.68 0.674333
Target:  5'- cCACcguUGCCCCgCGCCCguccUCGAACU-CCAu -3'
miRNA:   3'- -GUGu--AUGGGG-GCGGG----GGCUUGAuGGU- -5'
29430 5' -58.2 NC_006151.1 + 123010 0.68 0.674333
Target:  5'- gGCGcGCCCCCGCCggCGGAC-GCCGu -3'
miRNA:   3'- gUGUaUGGGGGCGGggGCUUGaUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.