miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29430 5' -58.2 NC_006151.1 + 21875 0.67 0.771694
Target:  5'- gUACugGCCCucguugaaCCGCCCCgGAGCcACCAu -3'
miRNA:   3'- -GUGuaUGGG--------GGCGGGGgCUUGaUGGU- -5'
29430 5' -58.2 NC_006151.1 + 137649 0.67 0.771694
Target:  5'- cCGC--GCCCCCGUCCCggcggaCGAGCgcccGCCGu -3'
miRNA:   3'- -GUGuaUGGGGGCGGGG------GCUUGa---UGGU- -5'
29430 5' -58.2 NC_006151.1 + 137933 0.67 0.771694
Target:  5'- gCGCcUGCUCCCcuuuggggacgcGCCCCCGGGCUucgacgACCc -3'
miRNA:   3'- -GUGuAUGGGGG------------CGGGGGCUUGA------UGGu -5'
29430 5' -58.2 NC_006151.1 + 50777 0.67 0.771694
Target:  5'- gACGgccGCCCCgaCGCCCCa--GCUGCCGa -3'
miRNA:   3'- gUGUa--UGGGG--GCGGGGgcuUGAUGGU- -5'
29430 5' -58.2 NC_006151.1 + 59317 0.67 0.771694
Target:  5'- aGCGgGCCCgCGCCCCCGcccGCccCCAg -3'
miRNA:   3'- gUGUaUGGGgGCGGGGGCu--UGauGGU- -5'
29430 5' -58.2 NC_006151.1 + 36697 0.67 0.771694
Target:  5'- cCGCGaGCCCCUGCUCgaCGAGCccGCCGc -3'
miRNA:   3'- -GUGUaUGGGGGCGGGg-GCUUGa-UGGU- -5'
29430 5' -58.2 NC_006151.1 + 2178 0.67 0.770766
Target:  5'- gGCcgGCCCCgGCgCCCGAggcccccGCggGCCGg -3'
miRNA:   3'- gUGuaUGGGGgCGgGGGCU-------UGa-UGGU- -5'
29430 5' -58.2 NC_006151.1 + 149 0.67 0.762359
Target:  5'- uGCAUaACCCCUcCCCCUGAuCUGCa- -3'
miRNA:   3'- gUGUA-UGGGGGcGGGGGCUuGAUGgu -5'
29430 5' -58.2 NC_006151.1 + 134803 0.67 0.752912
Target:  5'- cCGCGgcgGCCCgCGCCggaCCCGGACgguggcgACCGc -3'
miRNA:   3'- -GUGUa--UGGGgGCGG---GGGCUUGa------UGGU- -5'
29430 5' -58.2 NC_006151.1 + 17205 0.67 0.752912
Target:  5'- -cCGUGCCCCgGgCCCCCGAguucaGgUACUg -3'
miRNA:   3'- guGUAUGGGGgC-GGGGGCU-----UgAUGGu -5'
29430 5' -58.2 NC_006151.1 + 20703 0.67 0.752912
Target:  5'- gCACGUACgaCCCCGCgUCCG-GCgggGCCGg -3'
miRNA:   3'- -GUGUAUG--GGGGCGgGGGCuUGa--UGGU- -5'
29430 5' -58.2 NC_006151.1 + 108114 0.67 0.74336
Target:  5'- gCGCAgguCCCCCcucaGCCCCCGucgucccaaccGGCcGCCAa -3'
miRNA:   3'- -GUGUau-GGGGG----CGGGGGC-----------UUGaUGGU- -5'
29430 5' -58.2 NC_006151.1 + 5680 0.67 0.74336
Target:  5'- aGCGgGCCCCCGCCgugCCGGcGCUgcgGCCAc -3'
miRNA:   3'- gUGUaUGGGGGCGGg--GGCU-UGA---UGGU- -5'
29430 5' -58.2 NC_006151.1 + 60715 0.67 0.74336
Target:  5'- cCGCGa--CCUCGgCCCCGAGgUGCCGg -3'
miRNA:   3'- -GUGUaugGGGGCgGGGGCUUgAUGGU- -5'
29430 5' -58.2 NC_006151.1 + 65107 0.67 0.742399
Target:  5'- gCGCAUGCCCCaggaggaCGCCCgucggCGGGCUccgcGCCAg -3'
miRNA:   3'- -GUGUAUGGGG-------GCGGGg----GCUUGA----UGGU- -5'
29430 5' -58.2 NC_006151.1 + 109813 0.67 0.733713
Target:  5'- cCGCcgGCCCCgCGCuCCCCGcuGGCggACCc -3'
miRNA:   3'- -GUGuaUGGGG-GCG-GGGGC--UUGa-UGGu -5'
29430 5' -58.2 NC_006151.1 + 111404 0.67 0.733713
Target:  5'- ----cACCCCCGCCggggcgggagaCCGAgcGCUGCCGc -3'
miRNA:   3'- guguaUGGGGGCGGg----------GGCU--UGAUGGU- -5'
29430 5' -58.2 NC_006151.1 + 101910 0.67 0.733713
Target:  5'- aGCAUGCCCaagcggcgCCgGCCCCCGug--GCCGg -3'
miRNA:   3'- gUGUAUGGG--------GG-CGGGGGCuugaUGGU- -5'
29430 5' -58.2 NC_006151.1 + 64175 0.67 0.733713
Target:  5'- -----gUCCCCGCCCCCGucGCcGCCc -3'
miRNA:   3'- guguauGGGGGCGGGGGCu-UGaUGGu -5'
29430 5' -58.2 NC_006151.1 + 2 0.68 0.72398
Target:  5'- cCAC---CCCCCGCuCCCCGGGg-GCCGc -3'
miRNA:   3'- -GUGuauGGGGGCG-GGGGCUUgaUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.