miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29430 5' -58.2 NC_006151.1 + 14798 0.75 0.333339
Target:  5'- cCGCucgACCgCCCGCCCCCGAcCcACCGc -3'
miRNA:   3'- -GUGua-UGG-GGGCGGGGGCUuGaUGGU- -5'
29430 5' -58.2 NC_006151.1 + 14940 0.68 0.694353
Target:  5'- aGCAgcCCCCCGuCCCCCGccucGACccCCAg -3'
miRNA:   3'- gUGUauGGGGGC-GGGGGC----UUGauGGU- -5'
29430 5' -58.2 NC_006151.1 + 15010 0.66 0.78999
Target:  5'- gUACGgGCCCCCGCccgaCCCCGAggagguGCgcguCCAc -3'
miRNA:   3'- -GUGUaUGGGGGCG----GGGGCU------UGau--GGU- -5'
29430 5' -58.2 NC_006151.1 + 17205 0.67 0.752912
Target:  5'- -cCGUGCCCCgGgCCCCCGAguucaGgUACUg -3'
miRNA:   3'- guGUAUGGGGgC-GGGGGCU-----UgAUGGu -5'
29430 5' -58.2 NC_006151.1 + 18522 0.66 0.78999
Target:  5'- aGCAUGCgcguCCCCGCCcgcgucggcaCCCGGAacgGCCGc -3'
miRNA:   3'- gUGUAUG----GGGGCGG----------GGGCUUga-UGGU- -5'
29430 5' -58.2 NC_006151.1 + 20703 0.67 0.752912
Target:  5'- gCACGUACgaCCCCGCgUCCG-GCgggGCCGg -3'
miRNA:   3'- -GUGUAUG--GGGGCGgGGGCuUGa--UGGU- -5'
29430 5' -58.2 NC_006151.1 + 21875 0.67 0.771694
Target:  5'- gUACugGCCCucguugaaCCGCCCCgGAGCcACCAu -3'
miRNA:   3'- -GUGuaUGGG--------GGCGGGGgCUUGaUGGU- -5'
29430 5' -58.2 NC_006151.1 + 24415 0.7 0.593548
Target:  5'- aGCAccACCCCCGCgCCCCaGACgucgACCu -3'
miRNA:   3'- gUGUa-UGGGGGCG-GGGGcUUGa---UGGu -5'
29430 5' -58.2 NC_006151.1 + 25450 0.66 0.78999
Target:  5'- cCGCG-GCCgCCCGCCCCCcccuGGC-GCCAu -3'
miRNA:   3'- -GUGUaUGG-GGGCGGGGGc---UUGaUGGU- -5'
29430 5' -58.2 NC_006151.1 + 25597 0.68 0.674333
Target:  5'- gACu--CCCCCGgacuCCCCCGGACUcCCc -3'
miRNA:   3'- gUGuauGGGGGC----GGGGGCUUGAuGGu -5'
29430 5' -58.2 NC_006151.1 + 25627 0.68 0.674333
Target:  5'- gACu--CCCCCGgacuCCCCCGGACUcCCc -3'
miRNA:   3'- gUGuauGGGGGC----GGGGGCUUGAuGGu -5'
29430 5' -58.2 NC_006151.1 + 25657 0.7 0.603625
Target:  5'- gACu--CCCCCGgacuCCCCCGGACUccccccccACCAa -3'
miRNA:   3'- gUGuauGGGGGC----GGGGGCUUGA--------UGGU- -5'
29430 5' -58.2 NC_006151.1 + 31600 0.71 0.543703
Target:  5'- cCGCGcuCCCCCGCCgCCUGGGCggggaUGCCGc -3'
miRNA:   3'- -GUGUauGGGGGCGG-GGGCUUG-----AUGGU- -5'
29430 5' -58.2 NC_006151.1 + 34258 0.68 0.714169
Target:  5'- gCGCcccCUCCCGCCcgCCCGAGgUACCGc -3'
miRNA:   3'- -GUGuauGGGGGCGG--GGGCUUgAUGGU- -5'
29430 5' -58.2 NC_006151.1 + 36697 0.67 0.771694
Target:  5'- cCGCGaGCCCCUGCUCgaCGAGCccGCCGc -3'
miRNA:   3'- -GUGUaUGGGGGCGGGg-GCUUGa-UGGU- -5'
29430 5' -58.2 NC_006151.1 + 36996 0.69 0.633954
Target:  5'- cCGCucGCCCuCCGcCCCCCGGGCccccGCCGc -3'
miRNA:   3'- -GUGuaUGGG-GGC-GGGGGCUUGa---UGGU- -5'
29430 5' -58.2 NC_006151.1 + 37226 0.69 0.664268
Target:  5'- cCGCGgccuccccgGCCCCgGCCCCgGAGCccGCCc -3'
miRNA:   3'- -GUGUa--------UGGGGgCGGGGgCUUGa-UGGu -5'
29430 5' -58.2 NC_006151.1 + 37315 0.7 0.563507
Target:  5'- gACGgGCCCCCGCCgaCCGAcgggccGCUGCUc -3'
miRNA:   3'- gUGUaUGGGGGCGGg-GGCU------UGAUGGu -5'
29430 5' -58.2 NC_006151.1 + 37871 0.66 0.80773
Target:  5'- cCGCGgACCCCCGCgCCgGGGaggcgACCGu -3'
miRNA:   3'- -GUGUaUGGGGGCGgGGgCUUga---UGGU- -5'
29430 5' -58.2 NC_006151.1 + 37941 0.66 0.824848
Target:  5'- gCGCAgcccgGCCgCgUGCCCCgCGAGCUGgCGg -3'
miRNA:   3'- -GUGUa----UGG-GgGCGGGG-GCUUGAUgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.