miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29430 5' -58.2 NC_006151.1 + 2 0.68 0.72398
Target:  5'- cCAC---CCCCCGCuCCCCGGGg-GCCGc -3'
miRNA:   3'- -GUGuauGGGGGCG-GGGGCUUgaUGGU- -5'
29430 5' -58.2 NC_006151.1 + 85 0.77 0.246915
Target:  5'- uGCAUAgCCCCGCCCCCucAUUugCAu -3'
miRNA:   3'- gUGUAUgGGGGCGGGGGcuUGAugGU- -5'
29430 5' -58.2 NC_006151.1 + 117 0.66 0.80773
Target:  5'- aGCAUGgCCCCuCCCCCucAUUugCAu -3'
miRNA:   3'- gUGUAUgGGGGcGGGGGcuUGAugGU- -5'
29430 5' -58.2 NC_006151.1 + 149 0.67 0.762359
Target:  5'- uGCAUaACCCCUcCCCCUGAuCUGCa- -3'
miRNA:   3'- gUGUA-UGGGGGcGGGGGCUuGAUGgu -5'
29430 5' -58.2 NC_006151.1 + 203 0.74 0.380119
Target:  5'- uGCAUAgCCCCGCCCCUucAUUugCAu -3'
miRNA:   3'- gUGUAUgGGGGCGGGGGcuUGAugGU- -5'
29430 5' -58.2 NC_006151.1 + 551 0.68 0.674333
Target:  5'- gCGCcgGCCCCUuccgcuuCCCCCGGACgugacGCCGg -3'
miRNA:   3'- -GUGuaUGGGGGc------GGGGGCUUGa----UGGU- -5'
29430 5' -58.2 NC_006151.1 + 614 0.68 0.674333
Target:  5'- gCGCcgGCCCCUuccgcuuCCCCCGGACgugacGCCGg -3'
miRNA:   3'- -GUGuaUGGGGGc------GGGGGCUUGa----UGGU- -5'
29430 5' -58.2 NC_006151.1 + 2178 0.67 0.770766
Target:  5'- gGCcgGCCCCgGCgCCCGAggcccccGCggGCCGg -3'
miRNA:   3'- gUGuaUGGGGgCGgGGGCU-------UGa-UGGU- -5'
29430 5' -58.2 NC_006151.1 + 5680 0.67 0.74336
Target:  5'- aGCGgGCCCCCGCCgugCCGGcGCUgcgGCCAc -3'
miRNA:   3'- gUGUaUGGGGGCGGg--GGCU-UGA---UGGU- -5'
29430 5' -58.2 NC_006151.1 + 6845 0.71 0.514447
Target:  5'- uGCAUG-CCCgGCCCCCGcGGCgGCCAu -3'
miRNA:   3'- gUGUAUgGGGgCGGGGGC-UUGaUGGU- -5'
29430 5' -58.2 NC_006151.1 + 8306 0.7 0.583498
Target:  5'- cCGCGUcccGCCCCgaGCCCCCGGggcGCgcggGCCu -3'
miRNA:   3'- -GUGUA---UGGGGg-CGGGGGCU---UGa---UGGu -5'
29430 5' -58.2 NC_006151.1 + 8367 0.76 0.271347
Target:  5'- gCGCGagGCCCCCGCCCCCGGGgggguCCGg -3'
miRNA:   3'- -GUGUa-UGGGGGCGGGGGCUUgau--GGU- -5'
29430 5' -58.2 NC_006151.1 + 9101 0.69 0.613724
Target:  5'- -----cUCCCCGCCCCCGAcCcGCCu -3'
miRNA:   3'- guguauGGGGGCGGGGGCUuGaUGGu -5'
29430 5' -58.2 NC_006151.1 + 9180 0.68 0.702308
Target:  5'- cCGCccGCCCUCGCCCCCuccgucucaUGCCAc -3'
miRNA:   3'- -GUGuaUGGGGGCGGGGGcuug-----AUGGU- -5'
29430 5' -58.2 NC_006151.1 + 10867 0.68 0.674333
Target:  5'- ----cGCCCCgGCCCCCcGGCUugguGCCGg -3'
miRNA:   3'- guguaUGGGGgCGGGGGcUUGA----UGGU- -5'
29430 5' -58.2 NC_006151.1 + 11294 0.69 0.654178
Target:  5'- -cCGU-CCCCCGCCcgcucuCCCGGGCcGCCGc -3'
miRNA:   3'- guGUAuGGGGGCGG------GGGCUUGaUGGU- -5'
29430 5' -58.2 NC_006151.1 + 11506 0.68 0.694353
Target:  5'- uGC-UGCCCCCGCCCCgcccgCGGcACU-CCGg -3'
miRNA:   3'- gUGuAUGGGGGCGGGG-----GCU-UGAuGGU- -5'
29430 5' -58.2 NC_006151.1 + 11572 0.68 0.683362
Target:  5'- gACAccCCCCCGCCCgCCGGgggagGCUucccggaACCAg -3'
miRNA:   3'- gUGUauGGGGGCGGG-GGCU-----UGA-------UGGU- -5'
29430 5' -58.2 NC_006151.1 + 12654 0.69 0.64407
Target:  5'- cCACAccaGCCCCCGCCgCCGcg--GCCGc -3'
miRNA:   3'- -GUGUa--UGGGGGCGGgGGCuugaUGGU- -5'
29430 5' -58.2 NC_006151.1 + 13472 0.66 0.828192
Target:  5'- cCGCGgGCCggaCCGCCCCgcCGAcucggguccuggcacGCUGCCAg -3'
miRNA:   3'- -GUGUaUGGg--GGCGGGG--GCU---------------UGAUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.