miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29430 5' -58.2 NC_006151.1 + 142944 0.66 0.816371
Target:  5'- aCACGcGCgCCCGCCCUCGcccAUcGCCAu -3'
miRNA:   3'- -GUGUaUGgGGGCGGGGGCu--UGaUGGU- -5'
29430 5' -58.2 NC_006151.1 + 140073 0.67 0.780908
Target:  5'- gCGCGUGCUCCgcgagauggUGCUCCUGAACgaggGCCu -3'
miRNA:   3'- -GUGUAUGGGG---------GCGGGGGCUUGa---UGGu -5'
29430 5' -58.2 NC_006151.1 + 137933 0.67 0.771694
Target:  5'- gCGCcUGCUCCCcuuuggggacgcGCCCCCGGGCUucgacgACCc -3'
miRNA:   3'- -GUGuAUGGGGG------------CGGGGGCUUGA------UGGu -5'
29430 5' -58.2 NC_006151.1 + 137649 0.67 0.771694
Target:  5'- cCGC--GCCCCCGUCCCggcggaCGAGCgcccGCCGu -3'
miRNA:   3'- -GUGuaUGGGGGCGGGG------GCUUGa---UGGU- -5'
29430 5' -58.2 NC_006151.1 + 137042 0.75 0.318712
Target:  5'- aCGCGUGcCCCCCGgCgCCGGugUACCGc -3'
miRNA:   3'- -GUGUAU-GGGGGCgGgGGCUugAUGGU- -5'
29430 5' -58.2 NC_006151.1 + 134803 0.67 0.752912
Target:  5'- cCGCGgcgGCCCgCGCCggaCCCGGACgguggcgACCGc -3'
miRNA:   3'- -GUGUa--UGGGgGCGG---GGGCUUGa------UGGU- -5'
29430 5' -58.2 NC_006151.1 + 134403 0.68 0.674333
Target:  5'- gACAU-CCCCUGCCCgCgCGAgcugguGCUGCCc -3'
miRNA:   3'- gUGUAuGGGGGCGGG-G-GCU------UGAUGGu -5'
29430 5' -58.2 NC_006151.1 + 131598 0.71 0.543703
Target:  5'- gGCAaaUGCCCCC-CCUCCGGGCcgGCCc -3'
miRNA:   3'- gUGU--AUGGGGGcGGGGGCUUGa-UGGu -5'
29430 5' -58.2 NC_006151.1 + 130976 0.71 0.543703
Target:  5'- --gGUACCCCgGCCgCCCGGGCUgaaACUg -3'
miRNA:   3'- gugUAUGGGGgCGG-GGGCUUGA---UGGu -5'
29430 5' -58.2 NC_006151.1 + 124012 0.66 0.78999
Target:  5'- gGCGUucuCCCCCgGCCCCuCGGAg-GCCc -3'
miRNA:   3'- gUGUAu--GGGGG-CGGGG-GCUUgaUGGu -5'
29430 5' -58.2 NC_006151.1 + 123010 0.68 0.674333
Target:  5'- gGCGcGCCCCCGCCggCGGAC-GCCGu -3'
miRNA:   3'- gUGUaUGGGGGCGGggGCUUGaUGGU- -5'
29430 5' -58.2 NC_006151.1 + 121473 0.72 0.485852
Target:  5'- gGCAaGCgCCCGCCCCCGGaggACgACCu -3'
miRNA:   3'- gUGUaUGgGGGCGGGGGCU---UGaUGGu -5'
29430 5' -58.2 NC_006151.1 + 117012 0.66 0.78999
Target:  5'- aCGCGcuCCCCCGCgggCCCGGGCcgcaggcggUACCAg -3'
miRNA:   3'- -GUGUauGGGGGCGg--GGGCUUG---------AUGGU- -5'
29430 5' -58.2 NC_006151.1 + 113742 0.68 0.713185
Target:  5'- aGCGUACCagcuguuCCCGCCgaagcccacuCCCGAGCcGCCu -3'
miRNA:   3'- gUGUAUGG-------GGGCGG----------GGGCUUGaUGGu -5'
29430 5' -58.2 NC_006151.1 + 112679 0.67 0.780908
Target:  5'- uCGC-UGgCCCCGCCCUggcuggCGGACUACgCGg -3'
miRNA:   3'- -GUGuAUgGGGGCGGGG------GCUUGAUG-GU- -5'
29430 5' -58.2 NC_006151.1 + 111404 0.67 0.733713
Target:  5'- ----cACCCCCGCCggggcgggagaCCGAgcGCUGCCGc -3'
miRNA:   3'- guguaUGGGGGCGGg----------GGCU--UGAUGGU- -5'
29430 5' -58.2 NC_006151.1 + 109813 0.67 0.733713
Target:  5'- cCGCcgGCCCCgCGCuCCCCGcuGGCggACCc -3'
miRNA:   3'- -GUGuaUGGGG-GCG-GGGGC--UUGa-UGGu -5'
29430 5' -58.2 NC_006151.1 + 109477 0.66 0.811206
Target:  5'- gCACGgggaGCCCCCGCggcucauguucacacCUCCGccGCUGCCGc -3'
miRNA:   3'- -GUGUa---UGGGGGCG---------------GGGGCu-UGAUGGU- -5'
29430 5' -58.2 NC_006151.1 + 109119 0.66 0.798934
Target:  5'- cCGCcgGCCCgCGCCCgccggCCGGGC-ACCu -3'
miRNA:   3'- -GUGuaUGGGgGCGGG-----GGCUUGaUGGu -5'
29430 5' -58.2 NC_006151.1 + 109069 0.73 0.439972
Target:  5'- aGCAgccgUCCCCGCCCCCGGAgUcgGCCc -3'
miRNA:   3'- gUGUau--GGGGGCGGGGGCUUgA--UGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.