miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29430 5' -58.2 NC_006151.1 + 92890 1.08 0.001846
Target:  5'- aCACAUACCCCCGCCCCCGAACUACCAg -3'
miRNA:   3'- -GUGUAUGGGGGCGGGGGCUUGAUGGU- -5'
29430 5' -58.2 NC_006151.1 + 44012 0.79 0.193769
Target:  5'- cCGCA-GCCCCCGCCCCgCGGGgaGCCGg -3'
miRNA:   3'- -GUGUaUGGGGGCGGGG-GCUUgaUGGU- -5'
29430 5' -58.2 NC_006151.1 + 85 0.77 0.246915
Target:  5'- uGCAUAgCCCCGCCCCCucAUUugCAu -3'
miRNA:   3'- gUGUAUgGGGGCGGGGGcuUGAugGU- -5'
29430 5' -58.2 NC_006151.1 + 8367 0.76 0.271347
Target:  5'- gCGCGagGCCCCCGCCCCCGGGgggguCCGg -3'
miRNA:   3'- -GUGUa-UGGGGGCGGGGGCUUgau--GGU- -5'
29430 5' -58.2 NC_006151.1 + 137042 0.75 0.318712
Target:  5'- aCGCGUGcCCCCCGgCgCCGGugUACCGc -3'
miRNA:   3'- -GUGUAU-GGGGGCgGgGGCUugAUGGU- -5'
29430 5' -58.2 NC_006151.1 + 14798 0.75 0.333339
Target:  5'- cCGCucgACCgCCCGCCCCCGAcCcACCGc -3'
miRNA:   3'- -GUGua-UGG-GGGCGGGGGCUuGaUGGU- -5'
29430 5' -58.2 NC_006151.1 + 38337 0.74 0.35619
Target:  5'- gGCcUGCCCCCGCUcuggCCCGAGCaGCCc -3'
miRNA:   3'- gUGuAUGGGGGCGG----GGGCUUGaUGGu -5'
29430 5' -58.2 NC_006151.1 + 203 0.74 0.380119
Target:  5'- uGCAUAgCCCCGCCCCUucAUUugCAu -3'
miRNA:   3'- gUGUAUgGGGGCGGGGGcuUGAugGU- -5'
29430 5' -58.2 NC_006151.1 + 41532 0.73 0.396659
Target:  5'- aGCGgaaGCCCCCGCCCgCGGACccCCGg -3'
miRNA:   3'- gUGUa--UGGGGGCGGGgGCUUGauGGU- -5'
29430 5' -58.2 NC_006151.1 + 42582 0.73 0.413656
Target:  5'- cCACGcGCCgCCCGUCCCCGAGagGCCu -3'
miRNA:   3'- -GUGUaUGG-GGGCGGGGGCUUgaUGGu -5'
29430 5' -58.2 NC_006151.1 + 107363 0.73 0.42232
Target:  5'- cCGCGg--CCCCGaUCCCCGGGCUGCCc -3'
miRNA:   3'- -GUGUaugGGGGC-GGGGGCUUGAUGGu -5'
29430 5' -58.2 NC_006151.1 + 107100 0.73 0.431093
Target:  5'- gCGCGUGCUCUgggCGCCgCCCGAGCcGCCGc -3'
miRNA:   3'- -GUGUAUGGGG---GCGG-GGGCUUGaUGGU- -5'
29430 5' -58.2 NC_006151.1 + 109069 0.73 0.439972
Target:  5'- aGCAgccgUCCCCGCCCCCGGAgUcgGCCc -3'
miRNA:   3'- gUGUau--GGGGGCGGGGGCUUgA--UGGu -5'
29430 5' -58.2 NC_006151.1 + 50898 0.73 0.439972
Target:  5'- cCGCGc-CCCCCGCCUCCuguuGCUACCGc -3'
miRNA:   3'- -GUGUauGGGGGCGGGGGcu--UGAUGGU- -5'
29430 5' -58.2 NC_006151.1 + 50017 0.72 0.448953
Target:  5'- gCGCGcgGCCCgcgcggCGCCCCCGGGCgcgGCCAu -3'
miRNA:   3'- -GUGUa-UGGGg-----GCGGGGGCUUGa--UGGU- -5'
29430 5' -58.2 NC_006151.1 + 82531 0.72 0.448953
Target:  5'- gCGCGUgucguugagcGCCCCCaGCCCgCCGAGCUggaagacgaACCAc -3'
miRNA:   3'- -GUGUA----------UGGGGG-CGGG-GGCUUGA---------UGGU- -5'
29430 5' -58.2 NC_006151.1 + 121473 0.72 0.485852
Target:  5'- gGCAaGCgCCCGCCCCCGGaggACgACCu -3'
miRNA:   3'- gUGUaUGgGGGCGGGGGCU---UGaUGGu -5'
29430 5' -58.2 NC_006151.1 + 46823 0.71 0.495303
Target:  5'- ---cUGCCUCUGCCCCCGAgACcGCCGc -3'
miRNA:   3'- guguAUGGGGGCGGGGGCU-UGaUGGU- -5'
29430 5' -58.2 NC_006151.1 + 6845 0.71 0.514447
Target:  5'- uGCAUG-CCCgGCCCCCGcGGCgGCCAu -3'
miRNA:   3'- gUGUAUgGGGgCGGGGGC-UUGaUGGU- -5'
29430 5' -58.2 NC_006151.1 + 31600 0.71 0.543703
Target:  5'- cCGCGcuCCCCCGCCgCCUGGGCggggaUGCCGc -3'
miRNA:   3'- -GUGUauGGGGGCGG-GGGCUUG-----AUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.