miRNA display CGI


Results 21 - 40 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29430 5' -58.2 NC_006151.1 + 130976 0.71 0.543703
Target:  5'- --gGUACCCCgGCCgCCCGGGCUgaaACUg -3'
miRNA:   3'- gugUAUGGGGgCGG-GGGCUUGA---UGGu -5'
29430 5' -58.2 NC_006151.1 + 31600 0.71 0.543703
Target:  5'- cCGCGcuCCCCCGCCgCCUGGGCggggaUGCCGc -3'
miRNA:   3'- -GUGUauGGGGGCGG-GGGCUUG-----AUGGU- -5'
29430 5' -58.2 NC_006151.1 + 107807 0.7 0.549622
Target:  5'- gCGCAUcgaGCCCCCGCCgCCGGucaucaacccgccCUACCc -3'
miRNA:   3'- -GUGUA---UGGGGGCGGgGGCUu------------GAUGGu -5'
29430 5' -58.2 NC_006151.1 + 37315 0.7 0.563507
Target:  5'- gACGgGCCCCCGCCgaCCGAcgggccGCUGCUc -3'
miRNA:   3'- gUGUaUGGGGGCGGg-GGCU------UGAUGGu -5'
29430 5' -58.2 NC_006151.1 + 38722 0.7 0.563507
Target:  5'- cCGCuccggaCCCCGCUCCCGcGCUGCUg -3'
miRNA:   3'- -GUGuaug--GGGGCGGGGGCuUGAUGGu -5'
29430 5' -58.2 NC_006151.1 + 48323 0.7 0.563507
Target:  5'- uCGCGUACUCgCUGCCgCCGGACaugACCGc -3'
miRNA:   3'- -GUGUAUGGG-GGCGGgGGCUUGa--UGGU- -5'
29430 5' -58.2 NC_006151.1 + 107483 0.7 0.573482
Target:  5'- gCGCGcUGCCgCUGCCCCCGucGCcGCCGg -3'
miRNA:   3'- -GUGU-AUGGgGGCGGGGGCu-UGaUGGU- -5'
29430 5' -58.2 NC_006151.1 + 8306 0.7 0.583498
Target:  5'- cCGCGUcccGCCCCgaGCCCCCGGggcGCgcggGCCu -3'
miRNA:   3'- -GUGUA---UGGGGg-CGGGGGCU---UGa---UGGu -5'
29430 5' -58.2 NC_006151.1 + 108316 0.7 0.583498
Target:  5'- cCACGc-CCCCCGCgCCCGGGCccGCCc -3'
miRNA:   3'- -GUGUauGGGGGCGgGGGCUUGa-UGGu -5'
29430 5' -58.2 NC_006151.1 + 24415 0.7 0.593548
Target:  5'- aGCAccACCCCCGCgCCCCaGACgucgACCu -3'
miRNA:   3'- gUGUa-UGGGGGCG-GGGGcUUGa---UGGu -5'
29430 5' -58.2 NC_006151.1 + 25657 0.7 0.603625
Target:  5'- gACu--CCCCCGgacuCCCCCGGACUccccccccACCAa -3'
miRNA:   3'- gUGuauGGGGGC----GGGGGCUUGA--------UGGU- -5'
29430 5' -58.2 NC_006151.1 + 9101 0.69 0.613724
Target:  5'- -----cUCCCCGCCCCCGAcCcGCCu -3'
miRNA:   3'- guguauGGGGGCGGGGGCUuGaUGGu -5'
29430 5' -58.2 NC_006151.1 + 62455 0.69 0.613724
Target:  5'- uGCAUcGCCCaCCGCgCCCgGGGCaGCCGg -3'
miRNA:   3'- gUGUA-UGGG-GGCG-GGGgCUUGaUGGU- -5'
29430 5' -58.2 NC_006151.1 + 39639 0.69 0.623836
Target:  5'- gCGCcgGgCCCCGgaCCCCGGucccGCUGCCGc -3'
miRNA:   3'- -GUGuaUgGGGGCg-GGGGCU----UGAUGGU- -5'
29430 5' -58.2 NC_006151.1 + 36996 0.69 0.633954
Target:  5'- cCGCucGCCCuCCGcCCCCCGGGCccccGCCGc -3'
miRNA:   3'- -GUGuaUGGG-GGC-GGGGGCUUGa---UGGU- -5'
29430 5' -58.2 NC_006151.1 + 50860 0.69 0.64407
Target:  5'- cCGCccuCCCgCGCCCCCGGACc-CCGu -3'
miRNA:   3'- -GUGuauGGGgGCGGGGGCUUGauGGU- -5'
29430 5' -58.2 NC_006151.1 + 12654 0.69 0.64407
Target:  5'- cCACAccaGCCCCCGCCgCCGcg--GCCGc -3'
miRNA:   3'- -GUGUa--UGGGGGCGGgGGCuugaUGGU- -5'
29430 5' -58.2 NC_006151.1 + 11294 0.69 0.654178
Target:  5'- -cCGU-CCCCCGCCcgcucuCCCGGGCcGCCGc -3'
miRNA:   3'- guGUAuGGGGGCGG------GGGCUUGaUGGU- -5'
29430 5' -58.2 NC_006151.1 + 37226 0.69 0.664268
Target:  5'- cCGCGgccuccccgGCCCCgGCCCCgGAGCccGCCc -3'
miRNA:   3'- -GUGUa--------UGGGGgCGGGGgCUUGa-UGGu -5'
29430 5' -58.2 NC_006151.1 + 25627 0.68 0.674333
Target:  5'- gACu--CCCCCGgacuCCCCCGGACUcCCc -3'
miRNA:   3'- gUGuauGGGGGC----GGGGGCUUGAuGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.