miRNA display CGI


Results 41 - 60 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29435 3' -63.7 NC_006151.1 + 37175 0.67 0.519598
Target:  5'- --cGGCgccCGCCGcGGCcccGCGGCCCUCg -3'
miRNA:   3'- guaCCGa--GCGGCcCCGc--CGUUGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 108723 0.67 0.519598
Target:  5'- gGUGGCcagCGCCGaGGaGaCGGUGGCCCg- -3'
miRNA:   3'- gUACCGa--GCGGC-CC-C-GCCGUUGGGgg -5'
29435 3' -63.7 NC_006151.1 + 38622 0.67 0.519598
Target:  5'- --gGGCUCuCCGGcGCGGC--CCUCCg -3'
miRNA:   3'- guaCCGAGcGGCCcCGCCGuuGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 10186 0.67 0.519598
Target:  5'- -cUGcGUUCGCCGGucgcggcgcgGGCGGCGGCUgCa -3'
miRNA:   3'- guAC-CGAGCGGCC----------CCGCCGUUGGgGg -5'
29435 3' -63.7 NC_006151.1 + 5232 0.67 0.510297
Target:  5'- --aGGCcgagCGCCGcGcGGCGGCGGCgggggCCCg -3'
miRNA:   3'- guaCCGa---GCGGC-C-CCGCCGUUGg----GGG- -5'
29435 3' -63.7 NC_006151.1 + 32362 0.67 0.510297
Target:  5'- --gGGCUuucuucccggacCGCCGGGGaGGaAGCgCCCCg -3'
miRNA:   3'- guaCCGA------------GCGGCCCCgCCgUUG-GGGG- -5'
29435 3' -63.7 NC_006151.1 + 39795 0.67 0.510297
Target:  5'- --cGGCcaacCGCUGGGGgcuCGGC-GCCCCg -3'
miRNA:   3'- guaCCGa---GCGGCCCC---GCCGuUGGGGg -5'
29435 3' -63.7 NC_006151.1 + 36448 0.67 0.510297
Target:  5'- --cGGCUCucCCGGccccuCGGCAGCCCCg -3'
miRNA:   3'- guaCCGAGc-GGCCcc---GCCGUUGGGGg -5'
29435 3' -63.7 NC_006151.1 + 134782 0.67 0.510297
Target:  5'- --cGGCUC-CaCGGGccugugaggccGCGGCGGCCCgCg -3'
miRNA:   3'- guaCCGAGcG-GCCC-----------CGCCGUUGGGgG- -5'
29435 3' -63.7 NC_006151.1 + 6249 0.67 0.501065
Target:  5'- -cUGGCUgccgcCGUCGGGGcCGGaCGcgauGCCCUCu -3'
miRNA:   3'- guACCGA-----GCGGCCCC-GCC-GU----UGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 22412 0.67 0.501065
Target:  5'- uUAUGGaC-CGCUGGGcGUGGaucgcACCCCCc -3'
miRNA:   3'- -GUACC-GaGCGGCCC-CGCCgu---UGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 106806 0.67 0.501065
Target:  5'- --gGuGCUCGUCGGGGCcccgcuGGUGAUCgCCa -3'
miRNA:   3'- guaC-CGAGCGGCCCCG------CCGUUGGgGG- -5'
29435 3' -63.7 NC_006151.1 + 67562 0.67 0.501065
Target:  5'- aCGUGGCgC-CCGcGGGCGucCAGCCCgCCg -3'
miRNA:   3'- -GUACCGaGcGGC-CCCGCc-GUUGGG-GG- -5'
29435 3' -63.7 NC_006151.1 + 69652 0.67 0.501065
Target:  5'- --cGGCgcCGCCGGGuCGucgaAGCCCCCg -3'
miRNA:   3'- guaCCGa-GCGGCCCcGCcg--UUGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 130953 0.67 0.501065
Target:  5'- --gGGgUCGCgCGGGcGCGGgGGCcgguaCCCCg -3'
miRNA:   3'- guaCCgAGCG-GCCC-CGCCgUUG-----GGGG- -5'
29435 3' -63.7 NC_006151.1 + 111401 0.67 0.501065
Target:  5'- --cGGCaccccCGCCGGGGCGGgaGACCg-- -3'
miRNA:   3'- guaCCGa----GCGGCCCCGCCg-UUGGggg -5'
29435 3' -63.7 NC_006151.1 + 96609 0.67 0.500146
Target:  5'- --gGGCgCGCCGacgucgugcccgaGGGCGcGCAGCgCCUCg -3'
miRNA:   3'- guaCCGaGCGGC-------------CCCGC-CGUUG-GGGG- -5'
29435 3' -63.7 NC_006151.1 + 19447 0.67 0.500146
Target:  5'- --cGGCUCgcgcuggaGCCGcggcaccucGGGCGGCAgguagucgccgauGCCCCg -3'
miRNA:   3'- guaCCGAG--------CGGC---------CCCGCCGU-------------UGGGGg -5'
29435 3' -63.7 NC_006151.1 + 122385 0.67 0.491908
Target:  5'- --aGGCgCGCCGcGGGCGcGCGcuggcggcgcucGCCgCCg -3'
miRNA:   3'- guaCCGaGCGGC-CCCGC-CGU------------UGGgGG- -5'
29435 3' -63.7 NC_006151.1 + 83222 0.67 0.491908
Target:  5'- gCGUGGuCUgGUCGaagcGCGGCGcgcGCCCCCa -3'
miRNA:   3'- -GUACC-GAgCGGCcc--CGCCGU---UGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.