miRNA display CGI


Results 21 - 40 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29435 3' -63.7 NC_006151.1 + 4940 0.66 0.557419
Target:  5'- --cGGCcCGUCGGucGGCGGgGGCCCg- -3'
miRNA:   3'- guaCCGaGCGGCC--CCGCCgUUGGGgg -5'
29435 3' -63.7 NC_006151.1 + 25114 0.66 0.557419
Target:  5'- --cGuGCgagCGCUGGGcGUGGacgcgcgaCAACCCCCu -3'
miRNA:   3'- guaC-CGa--GCGGCCC-CGCC--------GUUGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 57433 0.66 0.557419
Target:  5'- ---aGCgucaCGuCCGucGCGGCGGCCCCCg -3'
miRNA:   3'- guacCGa---GC-GGCccCGCCGUUGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 72338 0.66 0.557419
Target:  5'- cCAUGGCcgcgagcacgUCGCCGccgcaGGGCaGcGCGACCUCg -3'
miRNA:   3'- -GUACCG----------AGCGGC-----CCCG-C-CGUUGGGGg -5'
29435 3' -63.7 NC_006151.1 + 125225 0.66 0.557419
Target:  5'- --cGGC-CGCCcgucGGGCccGGCGcuCCCCCg -3'
miRNA:   3'- guaCCGaGCGGc---CCCG--CCGUu-GGGGG- -5'
29435 3' -63.7 NC_006151.1 + 129339 0.66 0.557419
Target:  5'- --cGGC-C-CCGGGGCGGcCGGCgCgCCg -3'
miRNA:   3'- guaCCGaGcGGCCCCGCC-GUUGgG-GG- -5'
29435 3' -63.7 NC_006151.1 + 88886 0.66 0.554553
Target:  5'- --gGGCUCGUcaaaguacuCGGGGuCGGCGucgggcgagcggaaGCgCCCg -3'
miRNA:   3'- guaCCGAGCG---------GCCCC-GCCGU--------------UGgGGG- -5'
29435 3' -63.7 NC_006151.1 + 6287 0.66 0.547881
Target:  5'- ----cCUCgGCCGcGGCGGCGGCCgCCa -3'
miRNA:   3'- guaccGAG-CGGCcCCGCCGUUGGgGG- -5'
29435 3' -63.7 NC_006151.1 + 5876 0.66 0.547881
Target:  5'- --gGGC-CGCCGGGGgcccCGGCcuCUgCCg -3'
miRNA:   3'- guaCCGaGCGGCCCC----GCCGuuGGgGG- -5'
29435 3' -63.7 NC_006151.1 + 5653 0.66 0.547881
Target:  5'- --cGGCccggCGgCGGGGgaGGCuggggaagcgGGCCCCCg -3'
miRNA:   3'- guaCCGa---GCgGCCCCg-CCG----------UUGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 23416 0.66 0.54503
Target:  5'- gGUGG-UCGCCGGccguGGgGGCGAUgggugggaggguggCCCCg -3'
miRNA:   3'- gUACCgAGCGGCC----CCgCCGUUG--------------GGGG- -5'
29435 3' -63.7 NC_006151.1 + 49051 0.66 0.542183
Target:  5'- --gGGCUgGCCuucagcguccggcgcGGGGUGcCGAUCCCCc -3'
miRNA:   3'- guaCCGAgCGG---------------CCCCGCcGUUGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 97983 0.66 0.538395
Target:  5'- gGUGGUUCuuGCC-GGGCGGCGugGCCgCg -3'
miRNA:   3'- gUACCGAG--CGGcCCCGCCGU--UGGgGg -5'
29435 3' -63.7 NC_006151.1 + 33262 0.66 0.538395
Target:  5'- --gGGUggGgCGGuGGCGGCGGCCaucgCCCg -3'
miRNA:   3'- guaCCGagCgGCC-CCGCCGUUGG----GGG- -5'
29435 3' -63.7 NC_006151.1 + 42716 0.66 0.538395
Target:  5'- -uUGGaaucagagaGagGGGGCGGgGACCCCCa -3'
miRNA:   3'- guACCgag------CggCCCCGCCgUUGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 19274 0.66 0.536505
Target:  5'- uCGUGGCgCGCgGGGcccaccggggccaGCGGCGcgggcggccggucGCCCaCCg -3'
miRNA:   3'- -GUACCGaGCGgCCC-------------CGCCGU-------------UGGG-GG- -5'
29435 3' -63.7 NC_006151.1 + 101447 0.66 0.528966
Target:  5'- uCGUGGUcggCGCCGuGGGCcugGGCcucuACCgCCg -3'
miRNA:   3'- -GUACCGa--GCGGC-CCCG---CCGu---UGGgGG- -5'
29435 3' -63.7 NC_006151.1 + 7746 0.66 0.528966
Target:  5'- aCcgGGaagcgaCGCCGGGGCGGgAgaACCggaCCCg -3'
miRNA:   3'- -GuaCCga----GCGGCCCCGCCgU--UGG---GGG- -5'
29435 3' -63.7 NC_006151.1 + 4997 0.66 0.528966
Target:  5'- --cGGCgcuuccugCGCgGGGGCcgGGCGGgCUCCg -3'
miRNA:   3'- guaCCGa-------GCGgCCCCG--CCGUUgGGGG- -5'
29435 3' -63.7 NC_006151.1 + 2284 0.66 0.528966
Target:  5'- --cGGCggggCGCCcGcGGCGGCGACggcgCCCg -3'
miRNA:   3'- guaCCGa---GCGGcC-CCGCCGUUGg---GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.