miRNA display CGI


Results 21 - 40 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29435 3' -63.7 NC_006151.1 + 6287 0.66 0.547881
Target:  5'- ----cCUCgGCCGcGGCGGCGGCCgCCa -3'
miRNA:   3'- guaccGAG-CGGCcCCGCCGUUGGgGG- -5'
29435 3' -63.7 NC_006151.1 + 7039 0.71 0.303875
Target:  5'- --cGGCUCGCCcGGGCcaaugggcgcgcggaGGCGuCUCCCg -3'
miRNA:   3'- guaCCGAGCGGcCCCG---------------CCGUuGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 7746 0.66 0.528966
Target:  5'- aCcgGGaagcgaCGCCGGGGCGGgAgaACCggaCCCg -3'
miRNA:   3'- -GuaCCga----GCGGCCCCGCCgU--UGG---GGG- -5'
29435 3' -63.7 NC_006151.1 + 9037 0.69 0.388976
Target:  5'- ---cGCcCGCCGGGGCGccccGCGugCUCCg -3'
miRNA:   3'- guacCGaGCGGCCCCGC----CGUugGGGG- -5'
29435 3' -63.7 NC_006151.1 + 10186 0.67 0.519598
Target:  5'- -cUGcGUUCGCCGGucgcggcgcgGGCGGCGGCUgCa -3'
miRNA:   3'- guAC-CGAGCGGCC----------CCGCCGUUGGgGg -5'
29435 3' -63.7 NC_006151.1 + 10569 0.69 0.373236
Target:  5'- aAUGGCgcgGCCGGcucGGCGGCccGGCCCUUc -3'
miRNA:   3'- gUACCGag-CGGCC---CCGCCG--UUGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 10630 0.73 0.209055
Target:  5'- gCGUGcGCUCguGCCGGcGCGGCA-UCCCCg -3'
miRNA:   3'- -GUAC-CGAG--CGGCCcCGCCGUuGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 11028 0.68 0.413388
Target:  5'- ---cGCUCGCCGGGcCGGCcGGCCgggggCCCg -3'
miRNA:   3'- guacCGAGCGGCCCcGCCG-UUGG-----GGG- -5'
29435 3' -63.7 NC_006151.1 + 11233 0.76 0.135446
Target:  5'- cCcgGGCcgcgaggGCCGcGGCGGCGACCCCCu -3'
miRNA:   3'- -GuaCCGag-----CGGCcCCGCCGUUGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 11595 0.66 0.567004
Target:  5'- --aGGCUUcCCGGaaccagcGCGGCcaucAACCCCCu -3'
miRNA:   3'- guaCCGAGcGGCCc------CGCCG----UUGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 13699 0.69 0.373236
Target:  5'- --gGGCUC-CCGGGacGCgGGCAcggcuCCCCCa -3'
miRNA:   3'- guaCCGAGcGGCCC--CG-CCGUu----GGGGG- -5'
29435 3' -63.7 NC_006151.1 + 14270 0.68 0.455217
Target:  5'- --gGGUggGCCGGGagugggcGUGGCAACUCCUc -3'
miRNA:   3'- guaCCGagCGGCCC-------CGCCGUUGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 14426 0.75 0.172805
Target:  5'- --gGGCUUcCCGGGuGCGGCuccuCCCCCc -3'
miRNA:   3'- guaCCGAGcGGCCC-CGCCGuu--GGGGG- -5'
29435 3' -63.7 NC_006151.1 + 14929 0.67 0.473831
Target:  5'- --cGG-UC-CCGGGGa-GCAGCCCCCc -3'
miRNA:   3'- guaCCgAGcGGCCCCgcCGUUGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 15037 0.67 0.491908
Target:  5'- gGUGcGCguccacggCGCgCGGGGCcccGGCGccuucugcgcgGCCCCCu -3'
miRNA:   3'- gUAC-CGa-------GCG-GCCCCG---CCGU-----------UGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 17822 0.71 0.294628
Target:  5'- --gGGCgCGgCGGGGCgGGCGGCCaccaCCCg -3'
miRNA:   3'- guaCCGaGCgGCCCCG-CCGUUGG----GGG- -5'
29435 3' -63.7 NC_006151.1 + 18937 0.66 0.557419
Target:  5'- --aGGCgUCGaaGGGGCaGGCGGucagcaccggUCCCCg -3'
miRNA:   3'- guaCCG-AGCggCCCCG-CCGUU----------GGGGG- -5'
29435 3' -63.7 NC_006151.1 + 19274 0.66 0.536505
Target:  5'- uCGUGGCgCGCgGGGcccaccggggccaGCGGCGcgggcggccggucGCCCaCCg -3'
miRNA:   3'- -GUACCGaGCGgCCC-------------CGCCGU-------------UGGG-GG- -5'
29435 3' -63.7 NC_006151.1 + 19392 0.72 0.245983
Target:  5'- gCGUGGCcCGCCGgacggucaGGuGCGGCGACCaCCg -3'
miRNA:   3'- -GUACCGaGCGGC--------CC-CGCCGUUGGgGG- -5'
29435 3' -63.7 NC_006151.1 + 19447 0.67 0.500146
Target:  5'- --cGGCUCgcgcuggaGCCGcggcaccucGGGCGGCAgguagucgccgauGCCCCg -3'
miRNA:   3'- guaCCGAG--------CGGC---------CCCGCCGU-------------UGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.