miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29435 3' -63.7 NC_006151.1 + 658 0.68 0.421732
Target:  5'- --gGGCgcgGCCGGGGCGG--GCUCCg -3'
miRNA:   3'- guaCCGag-CGGCCCCGCCguUGGGGg -5'
29435 3' -63.7 NC_006151.1 + 1813 0.72 0.251679
Target:  5'- --aGGCaggCGCCGGGGaGGCAagcGCCgCCg -3'
miRNA:   3'- guaCCGa--GCGGCCCCgCCGU---UGGgGG- -5'
29435 3' -63.7 NC_006151.1 + 2169 0.75 0.160722
Target:  5'- ----cCUCGCCGGGGcCGGCcccggcgcccgaGGCCCCCg -3'
miRNA:   3'- guaccGAGCGGCCCC-GCCG------------UUGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 2284 0.66 0.528966
Target:  5'- --cGGCggggCGCCcGcGGCGGCGACggcgCCCg -3'
miRNA:   3'- guaCCGa---GCGGcC-CCGCCGUUGg---GGG- -5'
29435 3' -63.7 NC_006151.1 + 2449 0.7 0.343077
Target:  5'- --gGGC-CGCagCGGGGCGcCgAGCCCCCa -3'
miRNA:   3'- guaCCGaGCG--GCCCCGCcG-UUGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 2689 0.7 0.335816
Target:  5'- --cGGCUCGgccCCGGGGUgcaGGCGggcgaaggagGCCUCCa -3'
miRNA:   3'- guaCCGAGC---GGCCCCG---CCGU----------UGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 3416 0.68 0.447361
Target:  5'- uGUGGguCUCGCCGGccgggacgcGGCGGaAGCCgCCg -3'
miRNA:   3'- gUACC--GAGCGGCC---------CCGCCgUUGGgGG- -5'
29435 3' -63.7 NC_006151.1 + 3668 0.73 0.21909
Target:  5'- ----cCUCGCCguccccGGGGCGGCGGgCCCCg -3'
miRNA:   3'- guaccGAGCGG------CCCCGCCGUUgGGGG- -5'
29435 3' -63.7 NC_006151.1 + 3951 0.67 0.491908
Target:  5'- --gGGCUCcgcgggcCCGGGccgcGCGGCGGCCUCg -3'
miRNA:   3'- guaCCGAGc------GGCCC----CGCCGUUGGGGg -5'
29435 3' -63.7 NC_006151.1 + 4693 0.68 0.443894
Target:  5'- aCAUGGcCUCGCCGGcGGCcccgcuguagaugaGGCGcacgaggGCCUCg -3'
miRNA:   3'- -GUACC-GAGCGGCC-CCG--------------CCGU-------UGGGGg -5'
29435 3' -63.7 NC_006151.1 + 4940 0.66 0.557419
Target:  5'- --cGGCcCGUCGGucGGCGGgGGCCCg- -3'
miRNA:   3'- guaCCGaGCGGCC--CCGCCgUUGGGgg -5'
29435 3' -63.7 NC_006151.1 + 4997 0.66 0.528966
Target:  5'- --cGGCgcuuccugCGCgGGGGCcgGGCGGgCUCCg -3'
miRNA:   3'- guaCCGa-------GCGgCCCCG--CCGUUgGGGG- -5'
29435 3' -63.7 NC_006151.1 + 5094 0.71 0.300547
Target:  5'- --cGGCgggCGCCGGcggagacGGUGGCGGCCCg- -3'
miRNA:   3'- guaCCGa--GCGGCC-------CCGCCGUUGGGgg -5'
29435 3' -63.7 NC_006151.1 + 5232 0.67 0.510297
Target:  5'- --aGGCcgagCGCCGcGcGGCGGCGGCgggggCCCg -3'
miRNA:   3'- guaCCGa---GCGGC-C-CCGCCGUUGg----GGG- -5'
29435 3' -63.7 NC_006151.1 + 5653 0.66 0.547881
Target:  5'- --cGGCccggCGgCGGGGgaGGCuggggaagcgGGCCCCCg -3'
miRNA:   3'- guaCCGa---GCgGCCCCg-CCG----------UUGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 5727 0.68 0.438721
Target:  5'- -cUGGUggCGCCGGGGUccgaGGCcgcGCCgCCg -3'
miRNA:   3'- guACCGa-GCGGCCCCG----CCGu--UGGgGG- -5'
29435 3' -63.7 NC_006151.1 + 5876 0.66 0.547881
Target:  5'- --gGGC-CGCCGGGGgcccCGGCcuCUgCCg -3'
miRNA:   3'- guaCCGaGCGGCCCC----GCCGuuGGgGG- -5'
29435 3' -63.7 NC_006151.1 + 5909 0.71 0.307905
Target:  5'- --aGuGCU-GCCGGGGuCGGCGGCCggggCCCg -3'
miRNA:   3'- guaC-CGAgCGGCCCC-GCCGUUGG----GGG- -5'
29435 3' -63.7 NC_006151.1 + 6131 0.7 0.357934
Target:  5'- uCGUGGCUCcggccgcgGCCGcGaGGaCGGCGGCCUCg -3'
miRNA:   3'- -GUACCGAG--------CGGC-C-CC-GCCGUUGGGGg -5'
29435 3' -63.7 NC_006151.1 + 6249 0.67 0.501065
Target:  5'- -cUGGCUgccgcCGUCGGGGcCGGaCGcgauGCCCUCu -3'
miRNA:   3'- guACCGA-----GCGGCCCC-GCC-GU----UGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.