miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29435 3' -63.7 NC_006151.1 + 90483 1.1 0.000501
Target:  5'- gCAUGGCUCGCCGGGGCGGCAACCCCCu -3'
miRNA:   3'- -GUACCGAGCGGCCCCGCCGUUGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 36862 0.85 0.030007
Target:  5'- --cGGcCUCGCCGGGGaCGGCGgggcGCCCCCg -3'
miRNA:   3'- guaCC-GAGCGGCCCC-GCCGU----UGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 82675 0.84 0.039855
Target:  5'- --cGGCgCGCCGcgggcgaGGGCGGCGGCCCCCg -3'
miRNA:   3'- guaCCGaGCGGC-------CCCGCCGUUGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 133379 0.81 0.060417
Target:  5'- gGUGGCg-GCCGGGGCGGCGGCCggggCCg -3'
miRNA:   3'- gUACCGagCGGCCCCGCCGUUGGg---GG- -5'
29435 3' -63.7 NC_006151.1 + 26362 0.79 0.090843
Target:  5'- --gGGCcgCGUCGGGGCGcGCGuCCCCCg -3'
miRNA:   3'- guaCCGa-GCGGCCCCGC-CGUuGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 93749 0.77 0.113873
Target:  5'- --gGGcCUCGUCGGGGCgcggGGCGuCCCCCa -3'
miRNA:   3'- guaCC-GAGCGGCCCCG----CCGUuGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 11233 0.76 0.135446
Target:  5'- cCcgGGCcgcgaggGCCGcGGCGGCGACCCCCu -3'
miRNA:   3'- -GuaCCGag-----CGGCcCCGCCGUUGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 38381 0.76 0.135446
Target:  5'- --aGcGCcggCGCCGGcGGCGGCGggcGCCCCCu -3'
miRNA:   3'- guaC-CGa--GCGGCC-CCGCCGU---UGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 72855 0.76 0.138819
Target:  5'- cCGUuGCUCGUCGGcgaGGCGGCGGCgCCCg -3'
miRNA:   3'- -GUAcCGAGCGGCC---CCGCCGUUGgGGG- -5'
29435 3' -63.7 NC_006151.1 + 111111 0.76 0.145798
Target:  5'- gAUGGCUCGgCGGGgaGCGcGCGucugugcgcGCCCCCg -3'
miRNA:   3'- gUACCGAGCgGCCC--CGC-CGU---------UGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 52384 0.75 0.153095
Target:  5'- --gGGCcCGCgGGGGCGGCGggcGCCgCCg -3'
miRNA:   3'- guaCCGaGCGgCCCCGCCGU---UGGgGG- -5'
29435 3' -63.7 NC_006151.1 + 41517 0.75 0.160722
Target:  5'- --gGGCgggCGCCGcGGaGCGGaAGCCCCCg -3'
miRNA:   3'- guaCCGa--GCGGC-CC-CGCCgUUGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 2169 0.75 0.160722
Target:  5'- ----cCUCGCCGGGGcCGGCcccggcgcccgaGGCCCCCg -3'
miRNA:   3'- guaccGAGCGGCCCC-GCCG------------UUGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 104466 0.75 0.160722
Target:  5'- --gGGCuUCGUCGGGGCGGacauggcgcaCGugCCCCg -3'
miRNA:   3'- guaCCG-AGCGGCCCCGCC----------GUugGGGG- -5'
29435 3' -63.7 NC_006151.1 + 133663 0.75 0.160722
Target:  5'- --aGGCgcuGCCGGcgcGGCGGCGcGCCCCCg -3'
miRNA:   3'- guaCCGag-CGGCC---CCGCCGU-UGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 36627 0.75 0.164663
Target:  5'- --cGGuCUCGgcgcCCGGcGGCGGCGgcGCCCCCu -3'
miRNA:   3'- guaCC-GAGC----GGCC-CCGCCGU--UGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 127852 0.75 0.164663
Target:  5'- --cGGCUgCGCCGGaGGgGGCGccGCCCgCCg -3'
miRNA:   3'- guaCCGA-GCGGCC-CCgCCGU--UGGG-GG- -5'
29435 3' -63.7 NC_006151.1 + 14426 0.75 0.172805
Target:  5'- --gGGCUUcCCGGGuGCGGCuccuCCCCCc -3'
miRNA:   3'- guaCCGAGcGGCCC-CGCCGuu--GGGGG- -5'
29435 3' -63.7 NC_006151.1 + 28169 0.75 0.172805
Target:  5'- --cGGCgUCGuuGGGGCGGCGAgUgCCg -3'
miRNA:   3'- guaCCG-AGCggCCCCGCCGUUgGgGG- -5'
29435 3' -63.7 NC_006151.1 + 105451 0.74 0.17701
Target:  5'- --cGGCgcgCGCCGGGGCccugGGCGACUUCUu -3'
miRNA:   3'- guaCCGa--GCGGCCCCG----CCGUUGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.