Results 1 - 20 of 205 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29435 | 3' | -63.7 | NC_006151.1 | + | 25114 | 0.66 | 0.557419 |
Target: 5'- --cGuGCgagCGCUGGGcGUGGacgcgcgaCAACCCCCu -3' miRNA: 3'- guaC-CGa--GCGGCCC-CGCC--------GUUGGGGG- -5' |
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29435 | 3' | -63.7 | NC_006151.1 | + | 53974 | 0.66 | 0.567004 |
Target: 5'- --cGGCggCGCCuccgcGGGcgucGCGGCgAGCUCCCg -3' miRNA: 3'- guaCCGa-GCGG-----CCC----CGCCG-UUGGGGG- -5' |
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29435 | 3' | -63.7 | NC_006151.1 | + | 44186 | 0.66 | 0.567004 |
Target: 5'- --cGGgUCGCCGuccGGGCGGCGGCg--- -3' miRNA: 3'- guaCCgAGCGGC---CCCGCCGUUGgggg -5' |
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29435 | 3' | -63.7 | NC_006151.1 | + | 11595 | 0.66 | 0.567004 |
Target: 5'- --aGGCUUcCCGGaaccagcGCGGCcaucAACCCCCu -3' miRNA: 3'- guaCCGAGcGGCCc------CGCCG----UUGGGGG- -5' |
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29435 | 3' | -63.7 | NC_006151.1 | + | 25212 | 0.66 | 0.567004 |
Target: 5'- gCGUGGcCUCGgCGGaGCcGCGACCUCUu -3' miRNA: 3'- -GUACC-GAGCgGCCcCGcCGUUGGGGG- -5' |
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29435 | 3' | -63.7 | NC_006151.1 | + | 129339 | 0.66 | 0.557419 |
Target: 5'- --cGGC-C-CCGGGGCGGcCGGCgCgCCg -3' miRNA: 3'- guaCCGaGcGGCCCCGCC-GUUGgG-GG- -5' |
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29435 | 3' | -63.7 | NC_006151.1 | + | 125225 | 0.66 | 0.557419 |
Target: 5'- --cGGC-CGCCcgucGGGCccGGCGcuCCCCCg -3' miRNA: 3'- guaCCGaGCGGc---CCCG--CCGUu-GGGGG- -5' |
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29435 | 3' | -63.7 | NC_006151.1 | + | 72338 | 0.66 | 0.557419 |
Target: 5'- cCAUGGCcgcgagcacgUCGCCGccgcaGGGCaGcGCGACCUCg -3' miRNA: 3'- -GUACCG----------AGCGGC-----CCCG-C-CGUUGGGGg -5' |
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29435 | 3' | -63.7 | NC_006151.1 | + | 57433 | 0.66 | 0.557419 |
Target: 5'- ---aGCgucaCGuCCGucGCGGCGGCCCCCg -3' miRNA: 3'- guacCGa---GC-GGCccCGCCGUUGGGGG- -5' |
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29435 | 3' | -63.7 | NC_006151.1 | + | 82293 | 0.66 | 0.567004 |
Target: 5'- --cGGC-CG-CGGGGCaGCGcGCCUCCg -3' miRNA: 3'- guaCCGaGCgGCCCCGcCGU-UGGGGG- -5' |
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29435 | 3' | -63.7 | NC_006151.1 | + | 103817 | 0.66 | 0.567004 |
Target: 5'- --cGGCg-GCCGuGGCGGCGGCCgUg -3' miRNA: 3'- guaCCGagCGGCcCCGCCGUUGGgGg -5' |
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29435 | 3' | -63.7 | NC_006151.1 | + | 119034 | 0.66 | 0.567004 |
Target: 5'- --aGGCgggCGCCaaGGacGGCGGCGccgcggccGCCUCCg -3' miRNA: 3'- guaCCGa--GCGG--CC--CCGCCGU--------UGGGGG- -5' |
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29435 | 3' | -63.7 | NC_006151.1 | + | 87268 | 0.66 | 0.57663 |
Target: 5'- gAUGuacGCcccccaGCCGGGGCuGCAcgcgccGCCCCCc -3' miRNA: 3'- gUAC---CGag----CGGCCCCGcCGU------UGGGGG- -5' |
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29435 | 3' | -63.7 | NC_006151.1 | + | 78178 | 0.66 | 0.57663 |
Target: 5'- --aGGCcgugucCGCCGucGCGGCGgACCCCUu -3' miRNA: 3'- guaCCGa-----GCGGCccCGCCGU-UGGGGG- -5' |
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29435 | 3' | -63.7 | NC_006151.1 | + | 64537 | 0.66 | 0.57663 |
Target: 5'- --cGGCcgCGUCgGGGGCGGCGAggCCg -3' miRNA: 3'- guaCCGa-GCGG-CCCCGCCGUUggGGg -5' |
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29435 | 3' | -63.7 | NC_006151.1 | + | 21359 | 0.66 | 0.57663 |
Target: 5'- --cGGCU--CCGcGGGCuGCGGCCaCCCg -3' miRNA: 3'- guaCCGAgcGGC-CCCGcCGUUGG-GGG- -5' |
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29435 | 3' | -63.7 | NC_006151.1 | + | 139640 | 0.66 | 0.57663 |
Target: 5'- --cGGCgccggCGCgGGGGUcgcGGCGggcgcGCCgCCCg -3' miRNA: 3'- guaCCGa----GCGgCCCCG---CCGU-----UGG-GGG- -5' |
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29435 | 3' | -63.7 | NC_006151.1 | + | 105754 | 0.66 | 0.57663 |
Target: 5'- gCGUGGCggcgCGCCuGGGCGaccGCGACgUCa -3' miRNA: 3'- -GUACCGa---GCGGcCCCGC---CGUUGgGGg -5' |
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29435 | 3' | -63.7 | NC_006151.1 | + | 66783 | 0.66 | 0.57663 |
Target: 5'- --cGGgaCGgCGGcGGCGGCGGCggggCCCg -3' miRNA: 3'- guaCCgaGCgGCC-CCGCCGUUGg---GGG- -5' |
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29435 | 3' | -63.7 | NC_006151.1 | + | 94378 | 0.66 | 0.57085 |
Target: 5'- cCAUGGCgcgCGCUcacaGGUGGCAGCucgugcagaccagguCCCCg -3' miRNA: 3'- -GUACCGa--GCGGcc--CCGCCGUUG---------------GGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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