miRNA display CGI


Results 21 - 40 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29435 3' -63.7 NC_006151.1 + 36378 0.74 0.181305
Target:  5'- --cGGCagagGCCGGGGCccccGGCGGCCCCg -3'
miRNA:   3'- guaCCGag--CGGCCCCG----CCGUUGGGGg -5'
29435 3' -63.7 NC_006151.1 + 109458 0.74 0.185692
Target:  5'- --cGGCcccgaCGCCGGaGCGGCAcggggaGCCCCCg -3'
miRNA:   3'- guaCCGa----GCGGCCcCGCCGU------UGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 69706 0.74 0.198948
Target:  5'- gGUGGCcgcCGCCgGGGGCaGCAgcgcgucgaugugGCCCCCc -3'
miRNA:   3'- gUACCGa--GCGG-CCCCGcCGU-------------UGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 45444 0.73 0.209055
Target:  5'- --gGGCgUCGCacgcaccgCGGGGCGGCGACggaCCCa -3'
miRNA:   3'- guaCCG-AGCG--------GCCCCGCCGUUGg--GGG- -5'
29435 3' -63.7 NC_006151.1 + 10630 0.73 0.209055
Target:  5'- gCGUGcGCUCguGCCGGcGCGGCA-UCCCCg -3'
miRNA:   3'- -GUAC-CGAG--CGGCCcCGCCGUuGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 63472 0.73 0.214022
Target:  5'- ---uGCUCGCaGGGGCGGCGgcgGCgCCCg -3'
miRNA:   3'- guacCGAGCGgCCCCGCCGU---UGgGGG- -5'
29435 3' -63.7 NC_006151.1 + 87337 0.73 0.21909
Target:  5'- cCcgGGCcUGCCGGgccuccagGGCcuGGCGGCCCCCg -3'
miRNA:   3'- -GuaCCGaGCGGCC--------CCG--CCGUUGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 3668 0.73 0.21909
Target:  5'- ----cCUCGCCguccccGGGGCGGCGGgCCCCg -3'
miRNA:   3'- guaccGAGCGG------CCCCGCCGUUgGGGG- -5'
29435 3' -63.7 NC_006151.1 + 125190 0.73 0.223738
Target:  5'- --cGGcCUCGCCGgcgucguGGGCcccGCGGCCCCCg -3'
miRNA:   3'- guaCC-GAGCGGC-------CCCGc--CGUUGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 69199 0.73 0.223738
Target:  5'- --gGGCUCGCucCGGGGCccgcgccGGCcGCCCCa -3'
miRNA:   3'- guaCCGAGCG--GCCCCG-------CCGuUGGGGg -5'
29435 3' -63.7 NC_006151.1 + 133633 0.73 0.229533
Target:  5'- --cGGCg-GCCGGGGCGGUggUCCg- -3'
miRNA:   3'- guaCCGagCGGCCCCGCCGuuGGGgg -5'
29435 3' -63.7 NC_006151.1 + 39847 0.72 0.232747
Target:  5'- --cGGC-CGCCGGGGCcucgccgagcuccGCGGCCCCg -3'
miRNA:   3'- guaCCGaGCGGCCCCGc------------CGUUGGGGg -5'
29435 3' -63.7 NC_006151.1 + 57512 0.72 0.23491
Target:  5'- --cGGCcgCGgCGGcGGCGGCcGCCUCCg -3'
miRNA:   3'- guaCCGa-GCgGCC-CCGCCGuUGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 36568 0.72 0.240393
Target:  5'- gGUGGCcgcagCGCCGGcacGGCGGgGGCCCgCu -3'
miRNA:   3'- gUACCGa----GCGGCC---CCGCCgUUGGGgG- -5'
29435 3' -63.7 NC_006151.1 + 106687 0.72 0.240393
Target:  5'- --cGGCgCGCCGGGcGcCGGCGACCuguacgcgCCCg -3'
miRNA:   3'- guaCCGaGCGGCCC-C-GCCGUUGG--------GGG- -5'
29435 3' -63.7 NC_006151.1 + 19392 0.72 0.245983
Target:  5'- gCGUGGCcCGCCGgacggucaGGuGCGGCGACCaCCg -3'
miRNA:   3'- -GUACCGaGCGGC--------CC-CGCCGUUGGgGG- -5'
29435 3' -63.7 NC_006151.1 + 1813 0.72 0.251679
Target:  5'- --aGGCaggCGCCGGGGaGGCAagcGCCgCCg -3'
miRNA:   3'- guaCCGa--GCGGCCCCgCCGU---UGGgGG- -5'
29435 3' -63.7 NC_006151.1 + 58408 0.72 0.251679
Target:  5'- cCAUGGCgcgcaGCUGGGcguGCGGCAGCCaCgCCu -3'
miRNA:   3'- -GUACCGag---CGGCCC---CGCCGUUGG-G-GG- -5'
29435 3' -63.7 NC_006151.1 + 20455 0.72 0.257484
Target:  5'- --gGGCUCG--GGGGUGGCGccgguCCCCCg -3'
miRNA:   3'- guaCCGAGCggCCCCGCCGUu----GGGGG- -5'
29435 3' -63.7 NC_006151.1 + 75451 0.72 0.257484
Target:  5'- gCGUGGCgcgCGUagCGGucGGCGGCcggcuugaaGACCCCCa -3'
miRNA:   3'- -GUACCGa--GCG--GCC--CCGCCG---------UUGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.