miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29435 3' -63.7 NC_006151.1 + 140201 0.7 0.32796
Target:  5'- uCGUGGCcacCGCgGGGGCGGUgcugcagAACCUgCg -3'
miRNA:   3'- -GUACCGa--GCGgCCCCGCCG-------UUGGGgG- -5'
29435 3' -63.7 NC_006151.1 + 139640 0.66 0.57663
Target:  5'- --cGGCgccggCGCgGGGGUcgcGGCGggcgcGCCgCCCg -3'
miRNA:   3'- guaCCGa----GCGgCCCCG---CCGU-----UGG-GGG- -5'
29435 3' -63.7 NC_006151.1 + 139081 0.7 0.33366
Target:  5'- --gGGCUcCGCCugGGGGCGcGCAuggcgcuguucacgACCCUCg -3'
miRNA:   3'- guaCCGA-GCGG--CCCCGC-CGU--------------UGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 137404 0.68 0.456094
Target:  5'- ---uGCcCGCCGGGG-GGC-GCCCUCg -3'
miRNA:   3'- guacCGaGCGGCCCCgCCGuUGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 136647 0.68 0.447361
Target:  5'- cCGUGgggcGCUCGCCccucgGGGaGCGcGCGGCCgCCg -3'
miRNA:   3'- -GUAC----CGAGCGG-----CCC-CGC-CGUUGGgGG- -5'
29435 3' -63.7 NC_006151.1 + 135034 0.69 0.365529
Target:  5'- --gGGC-CGCgucguccuCGGGGCGGU--CCCCCu -3'
miRNA:   3'- guaCCGaGCG--------GCCCCGCCGuuGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 134782 0.67 0.510297
Target:  5'- --cGGCUC-CaCGGGccugugaggccGCGGCGGCCCgCg -3'
miRNA:   3'- guaCCGAGcG-GCCC-----------CGCCGUUGGGgG- -5'
29435 3' -63.7 NC_006151.1 + 133663 0.75 0.160722
Target:  5'- --aGGCgcuGCCGGcgcGGCGGCGcGCCCCCg -3'
miRNA:   3'- guaCCGag-CGGCC---CCGCCGU-UGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 133633 0.73 0.229533
Target:  5'- --cGGCg-GCCGGGGCGGUggUCCg- -3'
miRNA:   3'- guaCCGagCGGCCCCGCCGuuGGGgg -5'
29435 3' -63.7 NC_006151.1 + 133379 0.81 0.060417
Target:  5'- gGUGGCg-GCCGGGGCGGCGGCCggggCCg -3'
miRNA:   3'- gUACCGagCGGCCCCGCCGUUGGg---GG- -5'
29435 3' -63.7 NC_006151.1 + 132857 0.7 0.335816
Target:  5'- --cGGC-CGgcCCGGGGCcGCGcCCCCCa -3'
miRNA:   3'- guaCCGaGC--GGCCCCGcCGUuGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 131897 0.7 0.350449
Target:  5'- --cGGCcgagggCGaCgGGGGCGGCAgcaggGCCUCCg -3'
miRNA:   3'- guaCCGa-----GC-GgCCCCGCCGU-----UGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 131727 0.69 0.373236
Target:  5'- gGUGGUagG-CGGGGUGGCGGgCCCg -3'
miRNA:   3'- gUACCGagCgGCCCCGCCGUUgGGGg -5'
29435 3' -63.7 NC_006151.1 + 131582 0.68 0.456094
Target:  5'- uCAUGGUggUCGCU---GCGGCAaauGCCCCCc -3'
miRNA:   3'- -GUACCG--AGCGGcccCGCCGU---UGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 131044 0.69 0.405146
Target:  5'- ---cGCUCGUCGGGGCcggaGGCcgUCUCCa -3'
miRNA:   3'- guacCGAGCGGCCCCG----CCGuuGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 130953 0.67 0.501065
Target:  5'- --gGGgUCGCgCGGGcGCGGgGGCcgguaCCCCg -3'
miRNA:   3'- guaCCgAGCG-GCCC-CGCCgUUG-----GGGG- -5'
29435 3' -63.7 NC_006151.1 + 130886 0.68 0.438721
Target:  5'- --cGGCggCGgUGGaGGCGGCGGCCgUCg -3'
miRNA:   3'- guaCCGa-GCgGCC-CCGCCGUUGGgGG- -5'
29435 3' -63.7 NC_006151.1 + 130705 0.69 0.405146
Target:  5'- --gGGCcCGaCGGGGCGGCccgggGGCCCgCg -3'
miRNA:   3'- guaCCGaGCgGCCCCGCCG-----UUGGGgG- -5'
29435 3' -63.7 NC_006151.1 + 129339 0.66 0.557419
Target:  5'- --cGGC-C-CCGGGGCGGcCGGCgCgCCg -3'
miRNA:   3'- guaCCGaGcGGCCCCGCC-GUUGgG-GG- -5'
29435 3' -63.7 NC_006151.1 + 128547 0.68 0.447361
Target:  5'- --gGGCcCGCCGGcGCGGU-GCCgCCCa -3'
miRNA:   3'- guaCCGaGCGGCCcCGCCGuUGG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.