miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29435 5' -55.1 NC_006151.1 + 90519 1.06 0.004617
Target:  5'- cUGGGAGAUCAUCGCGACGGCGAGUAAa -3'
miRNA:   3'- -ACCCUCUAGUAGCGCUGCCGCUCAUU- -5'
29435 5' -55.1 NC_006151.1 + 11783 0.77 0.371551
Target:  5'- gGGGAGAggg-CGCGugGGCGAGa-- -3'
miRNA:   3'- aCCCUCUaguaGCGCugCCGCUCauu -5'
29435 5' -55.1 NC_006151.1 + 40121 0.73 0.578027
Target:  5'- cUGuGGAGAUCGUcggcgucCGCGGCGGCGAc--- -3'
miRNA:   3'- -AC-CCUCUAGUA-------GCGCUGCCGCUcauu -5'
29435 5' -55.1 NC_006151.1 + 96420 0.72 0.599723
Target:  5'- cGcGGGGAUCAgCGCGAgcucCGGCGAGg-- -3'
miRNA:   3'- aC-CCUCUAGUaGCGCU----GCCGCUCauu -5'
29435 5' -55.1 NC_006151.1 + 17633 0.71 0.662061
Target:  5'- aUGGcgcGAGcgCGuUCGCGACGGCgGAGUGGg -3'
miRNA:   3'- -ACC---CUCuaGU-AGCGCUGCCG-CUCAUU- -5'
29435 5' -55.1 NC_006151.1 + 125541 0.7 0.723482
Target:  5'- cGuGGAGGUg--CGCGGCGGCGuGUAc -3'
miRNA:   3'- aC-CCUCUAguaGCGCUGCCGCuCAUu -5'
29435 5' -55.1 NC_006151.1 + 77354 0.7 0.73349
Target:  5'- aGGGGGugcuguucuaCGUCGcCGACGGCGGGg-- -3'
miRNA:   3'- aCCCUCua--------GUAGC-GCUGCCGCUCauu -5'
29435 5' -55.1 NC_006151.1 + 5519 0.7 0.739453
Target:  5'- cGGGcgccaagcggccgaGGAUCGagccgccUCGCGGCGGCGGGc-- -3'
miRNA:   3'- aCCC--------------UCUAGU-------AGCGCUGCCGCUCauu -5'
29435 5' -55.1 NC_006151.1 + 86714 0.69 0.761967
Target:  5'- cUGGGAGcUgGUCGCGGCGcgccgccGCGAGg-- -3'
miRNA:   3'- -ACCCUCuAgUAGCGCUGC-------CGCUCauu -5'
29435 5' -55.1 NC_006151.1 + 110666 0.69 0.781978
Target:  5'- gGGGGGAUUGgggcccaaagaCGCGGCGGUGGGg-- -3'
miRNA:   3'- aCCCUCUAGUa----------GCGCUGCCGCUCauu -5'
29435 5' -55.1 NC_006151.1 + 41356 0.69 0.788516
Target:  5'- cGGGuGGUCGUCGUggaggggagggaaaGGCGGUGGGa-- -3'
miRNA:   3'- aCCCuCUAGUAGCG--------------CUGCCGCUCauu -5'
29435 5' -55.1 NC_006151.1 + 130950 0.69 0.791296
Target:  5'- cGGGGGGUCGcgcgggCGCGGgGGCcGGUAc -3'
miRNA:   3'- aCCCUCUAGUa-----GCGCUgCCGcUCAUu -5'
29435 5' -55.1 NC_006151.1 + 8547 0.69 0.799557
Target:  5'- gUGGGGGGUgugcgagagagagCGUgCGUGugGGUGGGUGGg -3'
miRNA:   3'- -ACCCUCUA-------------GUA-GCGCugCCGCUCAUU- -5'
29435 5' -55.1 NC_006151.1 + 8115 0.69 0.804092
Target:  5'- gGGGGGGUCGgagCGCGgACcccgcccggugggggGGCGGGUGc -3'
miRNA:   3'- aCCCUCUAGUa--GCGC-UG---------------CCGCUCAUu -5'
29435 5' -55.1 NC_006151.1 + 10451 0.68 0.818328
Target:  5'- aGGGAGGagGaggaggaCGCGGCGGCG-GUGAa -3'
miRNA:   3'- aCCCUCUagUa------GCGCUGCCGCuCAUU- -5'
29435 5' -55.1 NC_006151.1 + 30826 0.68 0.827
Target:  5'- cGGGAGGa-GUUGCGugGGCGGa--- -3'
miRNA:   3'- aCCCUCUagUAGCGCugCCGCUcauu -5'
29435 5' -55.1 NC_006151.1 + 44369 0.68 0.827
Target:  5'- gGGGAGAggGUUGCGACGgucccgccGCGGGg-- -3'
miRNA:   3'- aCCCUCUagUAGCGCUGC--------CGCUCauu -5'
29435 5' -55.1 NC_006151.1 + 28169 0.68 0.843788
Target:  5'- cGGc--GUCGUUGgGGCGGCGAGUGc -3'
miRNA:   3'- aCCcucUAGUAGCgCUGCCGCUCAUu -5'
29435 5' -55.1 NC_006151.1 + 122441 0.68 0.851888
Target:  5'- cGGGAGGcggaggcggCGUCcacgGCGGCGGCGGGc-- -3'
miRNA:   3'- aCCCUCUa--------GUAG----CGCUGCCGCUCauu -5'
29435 5' -55.1 NC_006151.1 + 10407 0.68 0.851888
Target:  5'- gGGGAGAgCGggGUGACGccGCGGGUGGg -3'
miRNA:   3'- aCCCUCUaGUagCGCUGC--CGCUCAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.