Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29435 | 5' | -55.1 | NC_006151.1 | + | 49752 | 0.67 | 0.859782 |
Target: 5'- aGGGGGA-CGUgGaaGACGGCGAGg-- -3' miRNA: 3'- aCCCUCUaGUAgCg-CUGCCGCUCauu -5' |
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29435 | 5' | -55.1 | NC_006151.1 | + | 89471 | 0.67 | 0.859782 |
Target: 5'- aGGGcccgcGUCAcgugCGCGGCGGCGAGc-- -3' miRNA: 3'- aCCCuc---UAGUa---GCGCUGCCGCUCauu -5' |
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29435 | 5' | -55.1 | NC_006151.1 | + | 14464 | 0.67 | 0.874927 |
Target: 5'- cGGGuuGGGUUGggCGgGugGGCGGGUGGg -3' miRNA: 3'- aCCC--UCUAGUa-GCgCugCCGCUCAUU- -5' |
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29435 | 5' | -55.1 | NC_006151.1 | + | 133615 | 0.67 | 0.874927 |
Target: 5'- aGGGGcGUCuggggGUCGCGGCGGcCGGGg-- -3' miRNA: 3'- aCCCUcUAG-----UAGCGCUGCC-GCUCauu -5' |
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29435 | 5' | -55.1 | NC_006151.1 | + | 86154 | 0.67 | 0.889175 |
Target: 5'- gGGGAGcUCG-CGCuGACGcGCGAGa-- -3' miRNA: 3'- aCCCUCuAGUaGCG-CUGC-CGCUCauu -5' |
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29435 | 5' | -55.1 | NC_006151.1 | + | 84367 | 0.67 | 0.889175 |
Target: 5'- gGcGGuGAUCGcgaUCGCGGCGcGCGGGg-- -3' miRNA: 3'- aC-CCuCUAGU---AGCGCUGC-CGCUCauu -5' |
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29435 | 5' | -55.1 | NC_006151.1 | + | 29577 | 0.67 | 0.889175 |
Target: 5'- gGGGAGGaCGgaUCGCGGCGGCu----- -3' miRNA: 3'- aCCCUCUaGU--AGCGCUGCCGcucauu -5' |
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29435 | 5' | -55.1 | NC_006151.1 | + | 25369 | 0.67 | 0.889175 |
Target: 5'- aUGGGAGG-CGgcgGUGACGGCGgcGGUGGu -3' miRNA: 3'- -ACCCUCUaGUag-CGCUGCCGC--UCAUU- -5' |
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29435 | 5' | -55.1 | NC_006151.1 | + | 141326 | 0.66 | 0.895951 |
Target: 5'- cGGGAuGGUCAcCGCGuacGCGGgCGGGUc- -3' miRNA: 3'- aCCCU-CUAGUaGCGC---UGCC-GCUCAuu -5' |
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29435 | 5' | -55.1 | NC_006151.1 | + | 44493 | 0.66 | 0.902489 |
Target: 5'- gUGGGGGAUgGUgugggGUGGCGGUGGGg-- -3' miRNA: 3'- -ACCCUCUAgUAg----CGCUGCCGCUCauu -5' |
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29435 | 5' | -55.1 | NC_006151.1 | + | 141628 | 0.66 | 0.902489 |
Target: 5'- cGGGcGGGUCGcugcCGCGGCGGCGcGg-- -3' miRNA: 3'- aCCC-UCUAGUa---GCGCUGCCGCuCauu -5' |
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29435 | 5' | -55.1 | NC_006151.1 | + | 95757 | 0.66 | 0.908786 |
Target: 5'- aGcGGAGGcUC-UCGuCGGCGGCGAGc-- -3' miRNA: 3'- aC-CCUCU-AGuAGC-GCUGCCGCUCauu -5' |
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29435 | 5' | -55.1 | NC_006151.1 | + | 27481 | 0.66 | 0.91484 |
Target: 5'- cGGGGGGUCggCGgGGUGGUGGGa-- -3' miRNA: 3'- aCCCUCUAGuaGCgCUGCCGCUCauu -5' |
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29435 | 5' | -55.1 | NC_006151.1 | + | 78702 | 0.66 | 0.91484 |
Target: 5'- cGGGGccucGUCGcCGCGACGGCGcccGUGGg -3' miRNA: 3'- aCCCUc---UAGUaGCGCUGCCGCu--CAUU- -5' |
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29435 | 5' | -55.1 | NC_006151.1 | + | 130336 | 0.66 | 0.91484 |
Target: 5'- gGGGAGcUCG-CGCGccGCGGCGucGUGGu -3' miRNA: 3'- aCCCUCuAGUaGCGC--UGCCGCu-CAUU- -5' |
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29435 | 5' | -55.1 | NC_006151.1 | + | 83158 | 0.66 | 0.924568 |
Target: 5'- aGGGuguccuggagcucgGGGUCGUCGCGcggGCGGCaGAGc-- -3' miRNA: 3'- aCCC--------------UCUAGUAGCGC---UGCCG-CUCauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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