miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29435 5' -55.1 NC_006151.1 + 141628 0.66 0.902489
Target:  5'- cGGGcGGGUCGcugcCGCGGCGGCGcGg-- -3'
miRNA:   3'- aCCC-UCUAGUa---GCGCUGCCGCuCauu -5'
29435 5' -55.1 NC_006151.1 + 141326 0.66 0.895951
Target:  5'- cGGGAuGGUCAcCGCGuacGCGGgCGGGUc- -3'
miRNA:   3'- aCCCU-CUAGUaGCGC---UGCC-GCUCAuu -5'
29435 5' -55.1 NC_006151.1 + 133615 0.67 0.874927
Target:  5'- aGGGGcGUCuggggGUCGCGGCGGcCGGGg-- -3'
miRNA:   3'- aCCCUcUAG-----UAGCGCUGCC-GCUCauu -5'
29435 5' -55.1 NC_006151.1 + 130950 0.69 0.791296
Target:  5'- cGGGGGGUCGcgcgggCGCGGgGGCcGGUAc -3'
miRNA:   3'- aCCCUCUAGUa-----GCGCUgCCGcUCAUu -5'
29435 5' -55.1 NC_006151.1 + 130336 0.66 0.91484
Target:  5'- gGGGAGcUCG-CGCGccGCGGCGucGUGGu -3'
miRNA:   3'- aCCCUCuAGUaGCGC--UGCCGCu-CAUU- -5'
29435 5' -55.1 NC_006151.1 + 125541 0.7 0.723482
Target:  5'- cGuGGAGGUg--CGCGGCGGCGuGUAc -3'
miRNA:   3'- aC-CCUCUAguaGCGCUGCCGCuCAUu -5'
29435 5' -55.1 NC_006151.1 + 122441 0.68 0.851888
Target:  5'- cGGGAGGcggaggcggCGUCcacgGCGGCGGCGGGc-- -3'
miRNA:   3'- aCCCUCUa--------GUAG----CGCUGCCGCUCauu -5'
29435 5' -55.1 NC_006151.1 + 110666 0.69 0.781978
Target:  5'- gGGGGGAUUGgggcccaaagaCGCGGCGGUGGGg-- -3'
miRNA:   3'- aCCCUCUAGUa----------GCGCUGCCGCUCauu -5'
29435 5' -55.1 NC_006151.1 + 96420 0.72 0.599723
Target:  5'- cGcGGGGAUCAgCGCGAgcucCGGCGAGg-- -3'
miRNA:   3'- aC-CCUCUAGUaGCGCU----GCCGCUCauu -5'
29435 5' -55.1 NC_006151.1 + 95757 0.66 0.908786
Target:  5'- aGcGGAGGcUC-UCGuCGGCGGCGAGc-- -3'
miRNA:   3'- aC-CCUCU-AGuAGC-GCUGCCGCUCauu -5'
29435 5' -55.1 NC_006151.1 + 90519 1.06 0.004617
Target:  5'- cUGGGAGAUCAUCGCGACGGCGAGUAAa -3'
miRNA:   3'- -ACCCUCUAGUAGCGCUGCCGCUCAUU- -5'
29435 5' -55.1 NC_006151.1 + 89471 0.67 0.859782
Target:  5'- aGGGcccgcGUCAcgugCGCGGCGGCGAGc-- -3'
miRNA:   3'- aCCCuc---UAGUa---GCGCUGCCGCUCauu -5'
29435 5' -55.1 NC_006151.1 + 86714 0.69 0.761967
Target:  5'- cUGGGAGcUgGUCGCGGCGcgccgccGCGAGg-- -3'
miRNA:   3'- -ACCCUCuAgUAGCGCUGC-------CGCUCauu -5'
29435 5' -55.1 NC_006151.1 + 86154 0.67 0.889175
Target:  5'- gGGGAGcUCG-CGCuGACGcGCGAGa-- -3'
miRNA:   3'- aCCCUCuAGUaGCG-CUGC-CGCUCauu -5'
29435 5' -55.1 NC_006151.1 + 84367 0.67 0.889175
Target:  5'- gGcGGuGAUCGcgaUCGCGGCGcGCGGGg-- -3'
miRNA:   3'- aC-CCuCUAGU---AGCGCUGC-CGCUCauu -5'
29435 5' -55.1 NC_006151.1 + 83158 0.66 0.924568
Target:  5'- aGGGuguccuggagcucgGGGUCGUCGCGcggGCGGCaGAGc-- -3'
miRNA:   3'- aCCC--------------UCUAGUAGCGC---UGCCG-CUCauu -5'
29435 5' -55.1 NC_006151.1 + 78702 0.66 0.91484
Target:  5'- cGGGGccucGUCGcCGCGACGGCGcccGUGGg -3'
miRNA:   3'- aCCCUc---UAGUaGCGCUGCCGCu--CAUU- -5'
29435 5' -55.1 NC_006151.1 + 77354 0.7 0.73349
Target:  5'- aGGGGGugcuguucuaCGUCGcCGACGGCGGGg-- -3'
miRNA:   3'- aCCCUCua--------GUAGC-GCUGCCGCUCauu -5'
29435 5' -55.1 NC_006151.1 + 49752 0.67 0.859782
Target:  5'- aGGGGGA-CGUgGaaGACGGCGAGg-- -3'
miRNA:   3'- aCCCUCUaGUAgCg-CUGCCGCUCauu -5'
29435 5' -55.1 NC_006151.1 + 44493 0.66 0.902489
Target:  5'- gUGGGGGAUgGUgugggGUGGCGGUGGGg-- -3'
miRNA:   3'- -ACCCUCUAgUAg----CGCUGCCGCUCauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.