miRNA display CGI


Results 1 - 20 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29437 5' -56.9 NC_006151.1 + 86041 1.08 0.002514
Target:  5'- gCUAUAUCCCGCAGUUCGCCGCCGCCUg -3'
miRNA:   3'- -GAUAUAGGGCGUCAAGCGGCGGCGGA- -5'
29437 5' -56.9 NC_006151.1 + 86070 0.77 0.293352
Target:  5'- -----gCCCGCAGUcuccgcgcgcgCGCCGCCGCCg -3'
miRNA:   3'- gauauaGGGCGUCAa----------GCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 60664 0.75 0.351978
Target:  5'- ---cGUCCuCGCucccgUCGCCGCCGCCg -3'
miRNA:   3'- gauaUAGG-GCGuca--AGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 37920 0.75 0.376006
Target:  5'- ---cGUCCCGCcgccUUCGCCGCCGCg- -3'
miRNA:   3'- gauaUAGGGCGuc--AAGCGGCGGCGga -5'
29437 5' -56.9 NC_006151.1 + 18724 0.75 0.392629
Target:  5'- ---cGUCCaCGUAGaucgcgucgUCGCCGCCGCCg -3'
miRNA:   3'- gauaUAGG-GCGUCa--------AGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 135886 0.74 0.401118
Target:  5'- -cGUGcggCCCGU-GUUCGUCGCCGCCg -3'
miRNA:   3'- gaUAUa--GGGCGuCAAGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 128094 0.74 0.41844
Target:  5'- -cAUGUCCCGCuGgccCGUCGUCGCCa -3'
miRNA:   3'- gaUAUAGGGCGuCaa-GCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 56088 0.74 0.41844
Target:  5'- -gGUGUCCUGCgacgAGUacCGCCGCCGCUg -3'
miRNA:   3'- gaUAUAGGGCG----UCAa-GCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 69639 0.74 0.43621
Target:  5'- ---cGUCCCGCGcGUgCGgCGCCGCCg -3'
miRNA:   3'- gauaUAGGGCGU-CAaGCgGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 113075 0.73 0.473008
Target:  5'- -cGUAcgagCgCGCGGccgUCGCCGCCGCCa -3'
miRNA:   3'- gaUAUa---GgGCGUCa--AGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 5613 0.73 0.473008
Target:  5'- ----cUCCgGCGGagggggCGCCGCCGCCg -3'
miRNA:   3'- gauauAGGgCGUCaa----GCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 39658 0.73 0.473008
Target:  5'- ---gGUCCCGCugc-CGCCGCgCGCCUa -3'
miRNA:   3'- gauaUAGGGCGucaaGCGGCG-GCGGA- -5'
29437 5' -56.9 NC_006151.1 + 69464 0.73 0.480556
Target:  5'- ------gCCGCGGgcgccggcaccgUCGCCGCCGCCUc -3'
miRNA:   3'- gauauagGGCGUCa-----------AGCGGCGGCGGA- -5'
29437 5' -56.9 NC_006151.1 + 58547 0.73 0.491985
Target:  5'- ----cUCCC-CGGUcgucuccucuUCGCCGCCGCCg -3'
miRNA:   3'- gauauAGGGcGUCA----------AGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 112210 0.72 0.510331
Target:  5'- ----cUCCCcgugggcGCAGUcgcgcucgcucgUCGCCGCCGCCa -3'
miRNA:   3'- gauauAGGG-------CGUCA------------AGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 60612 0.72 0.511305
Target:  5'- ------aCCGCcGUcgUCGCCGCCGCCg -3'
miRNA:   3'- gauauagGGCGuCA--AGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 111380 0.72 0.521083
Target:  5'- -----cCUCGCcGUcgUCGCCGCCGCCg -3'
miRNA:   3'- gauauaGGGCGuCA--AGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 69423 0.72 0.530933
Target:  5'- ---cGUCgCGcCAGgcggCGCCGCCGCCg -3'
miRNA:   3'- gauaUAGgGC-GUCaa--GCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 25015 0.72 0.540849
Target:  5'- -----cCCCGCuGcugUCGCCGUCGCCg -3'
miRNA:   3'- gauauaGGGCGuCa--AGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 17479 0.72 0.540849
Target:  5'- -cGUGUCCUcgucgGCGGcgCGCCGCUGCUg -3'
miRNA:   3'- gaUAUAGGG-----CGUCaaGCGGCGGCGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.