miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29437 5' -56.9 NC_006151.1 + 781 0.66 0.841943
Target:  5'- -----gCCaCGCGG-UCGCCGUCGUCa -3'
miRNA:   3'- gauauaGG-GCGUCaAGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 1696 0.72 0.550828
Target:  5'- ------gCCGCGGc-CGCCGCCGCCg -3'
miRNA:   3'- gauauagGGCGUCaaGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 2113 0.68 0.771567
Target:  5'- ------gCCGCGGggccggccgUCGCCGCCGCg- -3'
miRNA:   3'- gauauagGGCGUCa--------AGCGGCGGCGga -5'
29437 5' -56.9 NC_006151.1 + 4118 0.68 0.780892
Target:  5'- -----gUCCGCGGccUGCCGCCGCUc -3'
miRNA:   3'- gauauaGGGCGUCaaGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 5380 0.67 0.80803
Target:  5'- --cUGUCuCUGCGGgggCGCC-CCGCCg -3'
miRNA:   3'- gauAUAG-GGCGUCaa-GCGGcGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 5613 0.73 0.473008
Target:  5'- ----cUCCgGCGGagggggCGCCGCCGCCg -3'
miRNA:   3'- gauauAGGgCGUCaa----GCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 8288 0.67 0.799132
Target:  5'- -aGUGUcCCCGCGcGggCGCCGCguccCGCCc -3'
miRNA:   3'- gaUAUA-GGGCGU-CaaGCGGCG----GCGGa -5'
29437 5' -56.9 NC_006151.1 + 11925 0.68 0.780892
Target:  5'- -----cCUCGCGc--CGCCGCCGCCUc -3'
miRNA:   3'- gauauaGGGCGUcaaGCGGCGGCGGA- -5'
29437 5' -56.9 NC_006151.1 + 13157 0.67 0.790083
Target:  5'- ---gGUCCCGgaaauuucCGGgacggUCGCCGCgGCCg -3'
miRNA:   3'- gauaUAGGGC--------GUCa----AGCGGCGgCGGa -5'
29437 5' -56.9 NC_006151.1 + 13468 0.71 0.570944
Target:  5'- ---cGUCCCGCGGgccggacCGCC-CCGCCg -3'
miRNA:   3'- gauaUAGGGCGUCaa-----GCGGcGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 13749 0.66 0.865403
Target:  5'- ---cGUCCCGCGGgcCGgaCCGCCcCCUu -3'
miRNA:   3'- gauaUAGGGCGUCaaGC--GGCGGcGGA- -5'
29437 5' -56.9 NC_006151.1 + 15906 0.67 0.799132
Target:  5'- -----cCCCgacGCGGccCGCCGCCGCCc -3'
miRNA:   3'- gauauaGGG---CGUCaaGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 17479 0.72 0.540849
Target:  5'- -cGUGUCCUcgucgGCGGcgCGCCGCUGCUg -3'
miRNA:   3'- gaUAUAGGG-----CGUCaaGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 18445 0.66 0.857785
Target:  5'- -cGUcgCCCGCcuccucGUcgUCGUCGUCGCCg -3'
miRNA:   3'- gaUAuaGGGCGu-----CA--AGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 18724 0.75 0.392629
Target:  5'- ---cGUCCaCGUAGaucgcgucgUCGCCGCCGCCg -3'
miRNA:   3'- gauaUAGG-GCGUCa--------AGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 23746 0.66 0.857785
Target:  5'- -----cCuuGCAGUg-GCCGCCGUCa -3'
miRNA:   3'- gauauaGggCGUCAagCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 24506 0.66 0.872811
Target:  5'- -----gCCCGUaaaAGUUgGgCGCCGCCa -3'
miRNA:   3'- gauauaGGGCG---UCAAgCgGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 25015 0.72 0.540849
Target:  5'- -----cCCCGCuGcugUCGCCGUCGCCg -3'
miRNA:   3'- gauauaGGGCGuCa--AGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 25404 0.69 0.723259
Target:  5'- ------aCCGCgacgGGggCGCCGCCGCCc -3'
miRNA:   3'- gauauagGGCG----UCaaGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 28044 0.67 0.790083
Target:  5'- ---gGUCCCGCGa-UCGUCGUCGUCg -3'
miRNA:   3'- gauaUAGGGCGUcaAGCGGCGGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.