miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29437 5' -56.9 NC_006151.1 + 139921 0.66 0.841943
Target:  5'- ------gCCGCGGgcucgUCGCCguggGCCGCCg -3'
miRNA:   3'- gauauagGGCGUCa----AGCGG----CGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 137405 0.71 0.601427
Target:  5'- -----gCCCGcCGGggggcgcccUCGCCGCCGCCg -3'
miRNA:   3'- gauauaGGGC-GUCa--------AGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 136426 0.67 0.825338
Target:  5'- -----cCCCGCGGcggCGCaCGCCGCg- -3'
miRNA:   3'- gauauaGGGCGUCaa-GCG-GCGGCGga -5'
29437 5' -56.9 NC_006151.1 + 135886 0.74 0.401118
Target:  5'- -cGUGcggCCCGU-GUUCGUCGCCGCCg -3'
miRNA:   3'- gaUAUa--GGGCGuCAAGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 131782 0.68 0.762118
Target:  5'- ------gCCGCGGg-CGCCGCCGUCg -3'
miRNA:   3'- gauauagGGCGUCaaGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 130823 0.67 0.796433
Target:  5'- ---gGUCCCGCucgaggcgcggcgcGGagUCGUCGCCGUCg -3'
miRNA:   3'- gauaUAGGGCG--------------UCa-AGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 130545 0.66 0.841943
Target:  5'- -----cCCCGCgcgagggcGGcgCGCUGCCGCCc -3'
miRNA:   3'- gauauaGGGCG--------UCaaGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 129868 0.72 0.550828
Target:  5'- -----gCCCGUGGcgucgcgCGCCGCCGCCa -3'
miRNA:   3'- gauauaGGGCGUCaa-----GCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 129175 0.68 0.771567
Target:  5'- ---cGUCgCGCAGggcCGCCacgGCCGCCg -3'
miRNA:   3'- gauaUAGgGCGUCaa-GCGG---CGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 128094 0.74 0.41844
Target:  5'- -cAUGUCCCGCuGgccCGUCGUCGCCa -3'
miRNA:   3'- gaUAUAGGGCGuCaa-GCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 125387 0.67 0.80803
Target:  5'- ------gCCGCA--UCGCgGCCGCCUg -3'
miRNA:   3'- gauauagGGCGUcaAGCGgCGGCGGA- -5'
29437 5' -56.9 NC_006151.1 + 125205 0.68 0.742882
Target:  5'- -cGUGggcCCCGCGGccccCGCgGCCGCCc -3'
miRNA:   3'- gaUAUa--GGGCGUCaa--GCGgCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 118955 0.67 0.825338
Target:  5'- --cUGUCgCUGgAGgcgcUCGUCGCCGCCg -3'
miRNA:   3'- gauAUAG-GGCgUCa---AGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 114119 0.67 0.799132
Target:  5'- gCUGcugCCC-CAcGUgCGCCGCCGCCg -3'
miRNA:   3'- -GAUauaGGGcGU-CAaGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 113075 0.73 0.473008
Target:  5'- -cGUAcgagCgCGCGGccgUCGCCGCCGCCa -3'
miRNA:   3'- gaUAUa---GgGCGUCa--AGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 112425 0.67 0.790083
Target:  5'- ---gAUCgaCCGCcg--CGCCGCCGCCg -3'
miRNA:   3'- gauaUAG--GGCGucaaGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 112210 0.72 0.510331
Target:  5'- ----cUCCCcgugggcGCAGUcgcgcucgcucgUCGCCGCCGCCa -3'
miRNA:   3'- gauauAGGG-------CGUCA------------AGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 111380 0.72 0.521083
Target:  5'- -----cCUCGCcGUcgUCGCCGCCGCCg -3'
miRNA:   3'- gauauaGGGCGuCA--AGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 111145 0.68 0.752553
Target:  5'- -----cCCCGCGcg-CGCgGCCGCCUu -3'
miRNA:   3'- gauauaGGGCGUcaaGCGgCGGCGGA- -5'
29437 5' -56.9 NC_006151.1 + 109795 0.7 0.662798
Target:  5'- ----cUCCCGCcggAGUUUG-CGCCGCCg -3'
miRNA:   3'- gauauAGGGCG---UCAAGCgGCGGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.