Results 41 - 60 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29441 | 3' | -55.6 | NC_006151.1 | + | 78317 | 0.66 | 0.913621 |
Target: 5'- gCUCGacagGCugGAcgagcgccCCGGGgcgGGCGCGGGc -3' miRNA: 3'- aGAGUg---UGugUU--------GGCCCa--UCGCGCCU- -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 80366 | 1.09 | 0.002997 |
Target: 5'- gUCUCACACACAACCGGGUAGCGCGGAc -3' miRNA: 3'- -AGAGUGUGUGUUGGCCCAUCGCGCCU- -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 80672 | 0.69 | 0.78198 |
Target: 5'- --gCGCACGCAGagaguCUGGGUucgcggcccGGCGCGGGc -3' miRNA: 3'- agaGUGUGUGUU-----GGCCCA---------UCGCGCCU- -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 81487 | 0.68 | 0.834884 |
Target: 5'- gCUCGuucCACGCGGCCGucGGcgagAGCGCGGc -3' miRNA: 3'- aGAGU---GUGUGUUGGC--CCa---UCGCGCCu -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 81585 | 0.77 | 0.336203 |
Target: 5'- gUCUCGCGCGCGucGCCGGGgccgccGGCGCGc- -3' miRNA: 3'- -AGAGUGUGUGU--UGGCCCa-----UCGCGCcu -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 82616 | 0.73 | 0.541172 |
Target: 5'- --cCGCGCGCGggcGCCGcGGUgGGCGCGGGa -3' miRNA: 3'- agaGUGUGUGU---UGGC-CCA-UCGCGCCU- -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 82932 | 0.66 | 0.913621 |
Target: 5'- --gCACACGCAcuGCCGGauGUGGUcgccguacGCGGAc -3' miRNA: 3'- agaGUGUGUGU--UGGCC--CAUCG--------CGCCU- -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 86724 | 0.66 | 0.901326 |
Target: 5'- -gUCGCgGCGCGccgccgcgagGCCGGcGU-GCGCGGAc -3' miRNA: 3'- agAGUG-UGUGU----------UGGCC-CAuCGCGCCU- -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 88265 | 0.66 | 0.913621 |
Target: 5'- cCUCGacgaaGCGCAccgagaccgccGCCGGGUGGUagacGUGGGg -3' miRNA: 3'- aGAGUg----UGUGU-----------UGGCCCAUCG----CGCCU- -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 88542 | 0.66 | 0.894826 |
Target: 5'- --gCGCACGCugcGCCgcGGGUAGUagucGCGGAc -3' miRNA: 3'- agaGUGUGUGu--UGG--CCCAUCG----CGCCU- -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 91670 | 0.66 | 0.907592 |
Target: 5'- -aUCACcUGC-GCCGGGUGGUGCGc- -3' miRNA: 3'- agAGUGuGUGuUGGCCCAUCGCGCcu -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 93597 | 0.67 | 0.888093 |
Target: 5'- gCUCGCGCcgauggccugcaGCAGCCGGuccgcgcuGUAGCGCa-- -3' miRNA: 3'- aGAGUGUG------------UGUUGGCC--------CAUCGCGccu -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 95300 | 0.69 | 0.763168 |
Target: 5'- --aCGCGCGCGGcCCGGcGcAGCGCGGc -3' miRNA: 3'- agaGUGUGUGUU-GGCC-CaUCGCGCCu -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 96081 | 0.67 | 0.888093 |
Target: 5'- --gCGCGCGCGGCCGGcGaagAGCaugaGCGGGg -3' miRNA: 3'- agaGUGUGUGUUGGCC-Ca--UCG----CGCCU- -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 96328 | 0.66 | 0.903861 |
Target: 5'- --cCGCGCGCGuagagcGCCGGGUAGgCcucccgccagaaccaGCGGAg -3' miRNA: 3'- agaGUGUGUGU------UGGCCCAUC-G---------------CGCCU- -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 96584 | 0.69 | 0.791187 |
Target: 5'- cCUCGCgGCGCGaggcGCCGGGcgcgGGCGCGc- -3' miRNA: 3'- aGAGUG-UGUGU----UGGCCCa---UCGCGCcu -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 96772 | 0.68 | 0.843097 |
Target: 5'- gCUCgACACggggaggugaGCGgagagucccgaGCCGGGgcGCGCGGGc -3' miRNA: 3'- aGAG-UGUG----------UGU-----------UGGCCCauCGCGCCU- -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 96970 | 0.67 | 0.886029 |
Target: 5'- -gUCACACACGACgCggacgcggcacggaGGGUcAGCGgGGGg -3' miRNA: 3'- agAGUGUGUGUUG-G--------------CCCA-UCGCgCCU- -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 97228 | 0.79 | 0.27943 |
Target: 5'- --aCAUGCACGAguuCCGGGUGGCGCGGc -3' miRNA: 3'- agaGUGUGUGUU---GGCCCAUCGCGCCu -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 100041 | 0.7 | 0.714249 |
Target: 5'- gCUCGCGCACGagcuGCaCGGGgucgugcGCGCGGc -3' miRNA: 3'- aGAGUGUGUGU----UG-GCCCau-----CGCGCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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