miRNA display CGI


Results 21 - 40 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29441 3' -55.6 NC_006151.1 + 30732 0.71 0.643047
Target:  5'- cUCUCACGCGgGcCCGGaGUGcCGCGGGc -3'
miRNA:   3'- -AGAGUGUGUgUuGGCC-CAUcGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 32564 0.66 0.91941
Target:  5'- gUCUCccggGCACccGCGGCCGGGcGGagggggaaGCGGGa -3'
miRNA:   3'- -AGAG----UGUG--UGUUGGCCCaUCg-------CGCCU- -5'
29441 3' -55.6 NC_006151.1 + 33307 0.67 0.888093
Target:  5'- --gCGCGCGCGugggaccgggACCGGGacagGGgGCGGGg -3'
miRNA:   3'- agaGUGUGUGU----------UGGCCCa---UCgCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 38291 0.66 0.924959
Target:  5'- gCUCGCcgaggccgccGCGCGGcCCGGGcc-CGCGGAg -3'
miRNA:   3'- aGAGUG----------UGUGUU-GGCCCaucGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 39216 0.67 0.851117
Target:  5'- aCUCGCACGCcugGGCCGGGaacuggaccgGGCGCc-- -3'
miRNA:   3'- aGAGUGUGUG---UUGGCCCa---------UCGCGccu -5'
29441 3' -55.6 NC_006151.1 + 44454 0.72 0.632772
Target:  5'- cUCUCGCgACGCGAUgGGGggugAGgGUGGAc -3'
miRNA:   3'- -AGAGUG-UGUGUUGgCCCa---UCgCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 45448 0.73 0.581544
Target:  5'- -gUCGCACGCAccGCgGGGcGGCGaCGGAc -3'
miRNA:   3'- agAGUGUGUGU--UGgCCCaUCGC-GCCU- -5'
29441 3' -55.6 NC_006151.1 + 50367 0.66 0.901326
Target:  5'- gUCUC-CGC-CGGCgGGGgcgAGaCGCGGGc -3'
miRNA:   3'- -AGAGuGUGuGUUGgCCCa--UC-GCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 54820 0.74 0.51054
Target:  5'- gCUgGCGCGCGACgcgcucaCGGGcgAGCGCGGGg -3'
miRNA:   3'- aGAgUGUGUGUUG-------GCCCa-UCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 56182 0.69 0.753581
Target:  5'- cUCUCGCugGCcguGCCGccGGUGGCGCu-- -3'
miRNA:   3'- -AGAGUGugUGu--UGGC--CCAUCGCGccu -5'
29441 3' -55.6 NC_006151.1 + 57142 0.69 0.76412
Target:  5'- cCUgCGCACGCGGCgGGGgcgagggcgucccccGGCGCGGc -3'
miRNA:   3'- aGA-GUGUGUGUUGgCCCa--------------UCGCGCCu -5'
29441 3' -55.6 NC_006151.1 + 58410 0.69 0.80025
Target:  5'- -aUgGCGCGCAGCUGGGc-GUGCGGc -3'
miRNA:   3'- agAgUGUGUGUUGGCCCauCGCGCCu -5'
29441 3' -55.6 NC_006151.1 + 64330 0.73 0.531218
Target:  5'- cCUCGCAcCACGucGgCGGGaAGCGCGGGc -3'
miRNA:   3'- aGAGUGU-GUGU--UgGCCCaUCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 64724 0.68 0.834884
Target:  5'- cCUCGcCGCAgAACCGGGccacgagcucgAGCaGCGGGg -3'
miRNA:   3'- aGAGU-GUGUgUUGGCCCa----------UCG-CGCCU- -5'
29441 3' -55.6 NC_006151.1 + 66525 0.67 0.888093
Target:  5'- gCUCGCGCGC-GCCgcgcucuucgGGGgcGCGCGcGGc -3'
miRNA:   3'- aGAGUGUGUGuUGG----------CCCauCGCGC-CU- -5'
29441 3' -55.6 NC_006151.1 + 68748 0.66 0.924959
Target:  5'- cUCUCGaagguCACGUAGCCGgcGGUGGCGCGc- -3'
miRNA:   3'- -AGAGU-----GUGUGUUGGC--CCAUCGCGCcu -5'
29441 3' -55.6 NC_006151.1 + 70058 0.73 0.551188
Target:  5'- gCUCGCAgACGcccgaGCCGuGGUAGCGCGu- -3'
miRNA:   3'- aGAGUGUgUGU-----UGGC-CCAUCGCGCcu -5'
29441 3' -55.6 NC_006151.1 + 70666 0.7 0.743887
Target:  5'- cCUCACGCGCGccGCCGGcG-AGCGCu-- -3'
miRNA:   3'- aGAGUGUGUGU--UGGCC-CaUCGCGccu -5'
29441 3' -55.6 NC_006151.1 + 72553 0.68 0.826485
Target:  5'- --aCACGCGCGGCCgcgcgggaGGGUGgGgGCGGGu -3'
miRNA:   3'- agaGUGUGUGUUGG--------CCCAU-CgCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 72762 0.66 0.89283
Target:  5'- gCUgGCGCACAGCggCGGGUacgccuccuggaagAGCGCGc- -3'
miRNA:   3'- aGAgUGUGUGUUG--GCCCA--------------UCGCGCcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.