miRNA display CGI


Results 1 - 20 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29441 3' -55.6 NC_006151.1 + 651 0.69 0.78198
Target:  5'- gCUUccgGgGCGCGGCCGGGgcgGGCuccGCGGAu -3'
miRNA:   3'- aGAG---UgUGUGUUGGCCCa--UCG---CGCCU- -5'
29441 3' -55.6 NC_006151.1 + 2813 0.7 0.704217
Target:  5'- --gCGCACuggGCGGCCGGGUccaggcGGaCGCGGAc -3'
miRNA:   3'- agaGUGUG---UGUUGGCCCA------UC-GCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 3112 0.68 0.80916
Target:  5'- --cCGC-CGCGGCgCGGGUcccaggccgGGCGCGGGg -3'
miRNA:   3'- agaGUGuGUGUUG-GCCCA---------UCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 3421 0.66 0.91941
Target:  5'- gUCUCGC---CGGCCGGGacGCgGCGGAa -3'
miRNA:   3'- -AGAGUGuguGUUGGCCCauCG-CGCCU- -5'
29441 3' -55.6 NC_006151.1 + 3722 0.67 0.866551
Target:  5'- gCUCGgGCGCuggguCCGGGccGGCgGCGGGg -3'
miRNA:   3'- aGAGUgUGUGuu---GGCCCa-UCG-CGCCU- -5'
29441 3' -55.6 NC_006151.1 + 4195 0.66 0.905737
Target:  5'- cCUCGagGCaggcgggcccgaggGCGGCCGGGgcgcgggcgGGCGCGGGc -3'
miRNA:   3'- aGAGUg-UG--------------UGUUGGCCCa--------UCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 4312 0.76 0.392424
Target:  5'- gCUCgcgggGCACGCGGCCGGGcuGCGCGGc -3'
miRNA:   3'- aGAG-----UGUGUGUUGGCCCauCGCGCCu -5'
29441 3' -55.6 NC_006151.1 + 10659 0.67 0.858937
Target:  5'- --gCcCAgGCGGCgGGGgAGCGCGGAg -3'
miRNA:   3'- agaGuGUgUGUUGgCCCaUCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 14090 0.7 0.724211
Target:  5'- aCUCGCcgccccaacgACGCcgacggggaucGACCGGGagaGGCGCGGAg -3'
miRNA:   3'- aGAGUG----------UGUG-----------UUGGCCCa--UCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 16963 0.66 0.913621
Target:  5'- cCUCGuC-CACucGCCGGcGUGGCGCcaGGAg -3'
miRNA:   3'- aGAGU-GuGUGu-UGGCC-CAUCGCG--CCU- -5'
29441 3' -55.6 NC_006151.1 + 17390 0.66 0.913621
Target:  5'- -gUC-CGCACGACgGGGcgcgUGGCGCGcGGc -3'
miRNA:   3'- agAGuGUGUGUUGgCCC----AUCGCGC-CU- -5'
29441 3' -55.6 NC_006151.1 + 19272 0.72 0.632772
Target:  5'- gCUCgugGCGCGCGgggcccACCGGGgccagcGGCGCGGGc -3'
miRNA:   3'- aGAG---UGUGUGU------UGGCCCa-----UCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 20204 0.69 0.791187
Target:  5'- uUC-CGCGCGCAgcGCCGGGccGCGCaGGc -3'
miRNA:   3'- -AGaGUGUGUGU--UGGCCCauCGCGcCU- -5'
29441 3' -55.6 NC_006151.1 + 20505 0.71 0.694122
Target:  5'- gCUCugGCuCGAUCGGGggcGGCGUGGu -3'
miRNA:   3'- aGAGugUGuGUUGGCCCa--UCGCGCCu -5'
29441 3' -55.6 NC_006151.1 + 21484 0.81 0.219517
Target:  5'- gCUCggGCAgGCGGCCGGGgGGCGCGGGc -3'
miRNA:   3'- aGAG--UGUgUGUUGGCCCaUCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 21526 0.66 0.913621
Target:  5'- gCUCGgGCuuCGGCCGGGgccggGGC-CGGGg -3'
miRNA:   3'- aGAGUgUGu-GUUGGCCCa----UCGcGCCU- -5'
29441 3' -55.6 NC_006151.1 + 22532 0.69 0.80025
Target:  5'- -gUCGgGCGgGGCCGGGUcAG-GCGGAg -3'
miRNA:   3'- agAGUgUGUgUUGGCCCA-UCgCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 22997 0.73 0.551188
Target:  5'- aUCUCGgcCGCGCGGgUGGG-GGCGCGGGg -3'
miRNA:   3'- -AGAGU--GUGUGUUgGCCCaUCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 28266 0.66 0.924959
Target:  5'- cCUCACACGugggccCCGGGga-CGCGGGc -3'
miRNA:   3'- aGAGUGUGUguu---GGCCCaucGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 29122 0.66 0.907592
Target:  5'- --cCGCAuCGCgGGCCGGGaAGuCGCGGGa -3'
miRNA:   3'- agaGUGU-GUG-UUGGCCCaUC-GCGCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.