miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29441 3' -55.6 NC_006151.1 + 142070 0.69 0.797547
Target:  5'- gUUCGCACAuCAACCGaucuGGUAcgcccgcaggaccuGCGCGGGc -3'
miRNA:   3'- aGAGUGUGU-GUUGGC----CCAU--------------CGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 139819 0.66 0.907592
Target:  5'- gUCUCcgcgACGCAC-GCgCGGGUcGGCGCGa- -3'
miRNA:   3'- -AGAG----UGUGUGuUG-GCCCA-UCGCGCcu -5'
29441 3' -55.6 NC_006151.1 + 139616 0.69 0.785679
Target:  5'- gUC-CGgGCGCGGCUGGGggccauccggcgccGGCGCGGGg -3'
miRNA:   3'- -AGaGUgUGUGUUGGCCCa-------------UCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 136890 0.71 0.643047
Target:  5'- cCUCGCGCcccACGGCUGGGU-GCGCGc- -3'
miRNA:   3'- aGAGUGUG---UGUUGGCCCAuCGCGCcu -5'
29441 3' -55.6 NC_006151.1 + 135923 0.67 0.872488
Target:  5'- gUCgugCGCGCGCucuGCCGcGGggagccccucgcGGCGCGGGa -3'
miRNA:   3'- -AGa--GUGUGUGu--UGGC-CCa-----------UCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 135794 0.66 0.924959
Target:  5'- uUCUCACu----GCCGGGcgAGCGCGc- -3'
miRNA:   3'- -AGAGUGuguguUGGCCCa-UCGCGCcu -5'
29441 3' -55.6 NC_006151.1 + 133494 0.69 0.763168
Target:  5'- -gUCAccUugGCGGCgCGGGgGGCGCGGGa -3'
miRNA:   3'- agAGU--GugUGUUG-GCCCaUCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 130809 0.68 0.840653
Target:  5'- --gUACGCgGCGuCCGGGUcccgcucgaggcgcGGCGCGGAg -3'
miRNA:   3'- agaGUGUG-UGUuGGCCCA--------------UCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 130292 0.66 0.913621
Target:  5'- ---gGCGCGC-GCCGGccgacGGCGCGGAg -3'
miRNA:   3'- agagUGUGUGuUGGCCca---UCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 129966 0.66 0.907592
Target:  5'- --gCACGCGCGAgCGcacGGCGCGGAa -3'
miRNA:   3'- agaGUGUGUGUUgGCccaUCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 127458 0.74 0.511517
Target:  5'- ---gGCGCACGaagcGCUGGGcGGCGCGGAa -3'
miRNA:   3'- agagUGUGUGU----UGGCCCaUCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 127361 0.66 0.924959
Target:  5'- gUCUCGCcCugGGCgGGGac-CGCGGGg -3'
miRNA:   3'- -AGAGUGuGugUUGgCCCaucGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 122635 0.66 0.912434
Target:  5'- gUUCACGCACAACCuGGacgaccuggagcGGCGCGa- -3'
miRNA:   3'- aGAGUGUGUGUUGGcCCa-----------UCGCGCcu -5'
29441 3' -55.6 NC_006151.1 + 122308 0.73 0.561259
Target:  5'- cCUCACGCgGCAGCUGgcGGUGcGCGUGGAc -3'
miRNA:   3'- aGAGUGUG-UGUUGGC--CCAU-CGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 118764 0.66 0.907592
Target:  5'- --cCACGCGCGugCGgaaccuggacgcGGUGGCGCGcGGc -3'
miRNA:   3'- agaGUGUGUGUugGC------------CCAUCGCGC-CU- -5'
29441 3' -55.6 NC_006151.1 + 115934 0.71 0.683976
Target:  5'- cCUCGCGCAgGcccGCCGGGcgcgcgAGCGCGa- -3'
miRNA:   3'- aGAGUGUGUgU---UGGCCCa-----UCGCGCcu -5'
29441 3' -55.6 NC_006151.1 + 115560 0.72 0.632772
Target:  5'- aCUCGCcCGCGGgCGGGc-GCGCGGGc -3'
miRNA:   3'- aGAGUGuGUGUUgGCCCauCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 113409 0.67 0.851117
Target:  5'- gCUCACGCGCGcgcACUGGcUGGCGCu-- -3'
miRNA:   3'- aGAGUGUGUGU---UGGCCcAUCGCGccu -5'
29441 3' -55.6 NC_006151.1 + 113092 0.66 0.924959
Target:  5'- -gUCGCcgcCGCcACCGGGggcggGGCcGCGGAc -3'
miRNA:   3'- agAGUGu--GUGuUGGCCCa----UCG-CGCCU- -5'
29441 3' -55.6 NC_006151.1 + 113016 0.66 0.894163
Target:  5'- --cCACACGgGcgacgacgcgugcGCCGGGUGcuGCGCGGc -3'
miRNA:   3'- agaGUGUGUgU-------------UGGCCCAU--CGCGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.