miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29441 3' -55.6 NC_006151.1 + 106151 0.71 0.683976
Target:  5'- cUCUCGCGCACcuUCGGG--GCGCuGGAc -3'
miRNA:   3'- -AGAGUGUGUGuuGGCCCauCGCG-CCU- -5'
29441 3' -55.6 NC_006151.1 + 104989 0.67 0.866551
Target:  5'- cCUCGCucaACAuCGACCGGGccGCcuccGCGGAg -3'
miRNA:   3'- aGAGUG---UGU-GUUGGCCCauCG----CGCCU- -5'
29441 3' -55.6 NC_006151.1 + 103679 0.66 0.924959
Target:  5'- --gCGCGCGCGGCgGGGgugcuGCGCGc- -3'
miRNA:   3'- agaGUGUGUGUUGgCCCau---CGCGCcu -5'
29441 3' -55.6 NC_006151.1 + 103618 0.72 0.601976
Target:  5'- cCUCGCGCAC-GCCGacgcGGUGGCgGCGGc -3'
miRNA:   3'- aGAGUGUGUGuUGGC----CCAUCG-CGCCu -5'
29441 3' -55.6 NC_006151.1 + 103480 0.66 0.924959
Target:  5'- gCUCGCgGCGCuguggcGCCuGGUGGCGCGc- -3'
miRNA:   3'- aGAGUG-UGUGu-----UGGcCCAUCGCGCcu -5'
29441 3' -55.6 NC_006151.1 + 102673 0.67 0.888093
Target:  5'- aCUUugACGCcgugGACgCGGGggcgcccGGCGCGGGc -3'
miRNA:   3'- aGAGugUGUG----UUG-GCCCa------UCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 100041 0.7 0.714249
Target:  5'- gCUCGCGCACGagcuGCaCGGGgucgugcGCGCGGc -3'
miRNA:   3'- aGAGUGUGUGU----UG-GCCCau-----CGCGCCu -5'
29441 3' -55.6 NC_006151.1 + 97228 0.79 0.27943
Target:  5'- --aCAUGCACGAguuCCGGGUGGCGCGGc -3'
miRNA:   3'- agaGUGUGUGUU---GGCCCAUCGCGCCu -5'
29441 3' -55.6 NC_006151.1 + 96970 0.67 0.886029
Target:  5'- -gUCACACACGACgCggacgcggcacggaGGGUcAGCGgGGGg -3'
miRNA:   3'- agAGUGUGUGUUG-G--------------CCCA-UCGCgCCU- -5'
29441 3' -55.6 NC_006151.1 + 96772 0.68 0.843097
Target:  5'- gCUCgACACggggaggugaGCGgagagucccgaGCCGGGgcGCGCGGGc -3'
miRNA:   3'- aGAG-UGUG----------UGU-----------UGGCCCauCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 96584 0.69 0.791187
Target:  5'- cCUCGCgGCGCGaggcGCCGGGcgcgGGCGCGc- -3'
miRNA:   3'- aGAGUG-UGUGU----UGGCCCa---UCGCGCcu -5'
29441 3' -55.6 NC_006151.1 + 96328 0.66 0.903861
Target:  5'- --cCGCGCGCGuagagcGCCGGGUAGgCcucccgccagaaccaGCGGAg -3'
miRNA:   3'- agaGUGUGUGU------UGGCCCAUC-G---------------CGCCU- -5'
29441 3' -55.6 NC_006151.1 + 96081 0.67 0.888093
Target:  5'- --gCGCGCGCGGCCGGcGaagAGCaugaGCGGGg -3'
miRNA:   3'- agaGUGUGUGUUGGCC-Ca--UCG----CGCCU- -5'
29441 3' -55.6 NC_006151.1 + 95300 0.69 0.763168
Target:  5'- --aCGCGCGCGGcCCGGcGcAGCGCGGc -3'
miRNA:   3'- agaGUGUGUGUU-GGCC-CaUCGCGCCu -5'
29441 3' -55.6 NC_006151.1 + 93597 0.67 0.888093
Target:  5'- gCUCGCGCcgauggccugcaGCAGCCGGuccgcgcuGUAGCGCa-- -3'
miRNA:   3'- aGAGUGUG------------UGUUGGCC--------CAUCGCGccu -5'
29441 3' -55.6 NC_006151.1 + 91670 0.66 0.907592
Target:  5'- -aUCACcUGC-GCCGGGUGGUGCGc- -3'
miRNA:   3'- agAGUGuGUGuUGGCCCAUCGCGCcu -5'
29441 3' -55.6 NC_006151.1 + 88542 0.66 0.894826
Target:  5'- --gCGCACGCugcGCCgcGGGUAGUagucGCGGAc -3'
miRNA:   3'- agaGUGUGUGu--UGG--CCCAUCG----CGCCU- -5'
29441 3' -55.6 NC_006151.1 + 88265 0.66 0.913621
Target:  5'- cCUCGacgaaGCGCAccgagaccgccGCCGGGUGGUagacGUGGGg -3'
miRNA:   3'- aGAGUg----UGUGU-----------UGGCCCAUCG----CGCCU- -5'
29441 3' -55.6 NC_006151.1 + 86724 0.66 0.901326
Target:  5'- -gUCGCgGCGCGccgccgcgagGCCGGcGU-GCGCGGAc -3'
miRNA:   3'- agAGUG-UGUGU----------UGGCC-CAuCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 82932 0.66 0.913621
Target:  5'- --gCACACGCAcuGCCGGauGUGGUcgccguacGCGGAc -3'
miRNA:   3'- agaGUGUGUGU--UGGCC--CAUCG--------CGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.