Results 21 - 40 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29441 | 3' | -55.6 | NC_006151.1 | + | 115934 | 0.71 | 0.683976 |
Target: 5'- cCUCGCGCAgGcccGCCGGGcgcgcgAGCGCGa- -3' miRNA: 3'- aGAGUGUGUgU---UGGCCCa-----UCGCGCcu -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 20505 | 0.71 | 0.694122 |
Target: 5'- gCUCugGCuCGAUCGGGggcGGCGUGGu -3' miRNA: 3'- aGAGugUGuGUUGGCCCa--UCGCGCCu -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 2813 | 0.7 | 0.704217 |
Target: 5'- --gCGCACuggGCGGCCGGGUccaggcGGaCGCGGAc -3' miRNA: 3'- agaGUGUG---UGUUGGCCCA------UC-GCGCCU- -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 100041 | 0.7 | 0.714249 |
Target: 5'- gCUCGCGCACGagcuGCaCGGGgucgugcGCGCGGc -3' miRNA: 3'- aGAGUGUGUGU----UG-GCCCau-----CGCGCCu -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 14090 | 0.7 | 0.724211 |
Target: 5'- aCUCGCcgccccaacgACGCcgacggggaucGACCGGGagaGGCGCGGAg -3' miRNA: 3'- aGAGUG----------UGUG-----------UUGGCCCa--UCGCGCCU- -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 70666 | 0.7 | 0.743887 |
Target: 5'- cCUCACGCGCGccGCCGGcG-AGCGCu-- -3' miRNA: 3'- aGAGUGUGUGU--UGGCC-CaUCGCGccu -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 56182 | 0.69 | 0.753581 |
Target: 5'- cUCUCGCugGCcguGCCGccGGUGGCGCu-- -3' miRNA: 3'- -AGAGUGugUGu--UGGC--CCAUCGCGccu -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 95300 | 0.69 | 0.763168 |
Target: 5'- --aCGCGCGCGGcCCGGcGcAGCGCGGc -3' miRNA: 3'- agaGUGUGUGUU-GGCC-CaUCGCGCCu -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 133494 | 0.69 | 0.763168 |
Target: 5'- -gUCAccUugGCGGCgCGGGgGGCGCGGGa -3' miRNA: 3'- agAGU--GugUGUUG-GCCCaUCGCGCCU- -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 57142 | 0.69 | 0.76412 |
Target: 5'- cCUgCGCACGCGGCgGGGgcgagggcgucccccGGCGCGGc -3' miRNA: 3'- aGA-GUGUGUGUUGgCCCa--------------UCGCGCCu -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 651 | 0.69 | 0.78198 |
Target: 5'- gCUUccgGgGCGCGGCCGGGgcgGGCuccGCGGAu -3' miRNA: 3'- aGAG---UgUGUGUUGGCCCa--UCG---CGCCU- -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 80672 | 0.69 | 0.78198 |
Target: 5'- --gCGCACGCAGagaguCUGGGUucgcggcccGGCGCGGGc -3' miRNA: 3'- agaGUGUGUGUU-----GGCCCA---------UCGCGCCU- -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 139616 | 0.69 | 0.785679 |
Target: 5'- gUC-CGgGCGCGGCUGGGggccauccggcgccGGCGCGGGg -3' miRNA: 3'- -AGaGUgUGUGUUGGCCCa-------------UCGCGCCU- -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 96584 | 0.69 | 0.791187 |
Target: 5'- cCUCGCgGCGCGaggcGCCGGGcgcgGGCGCGc- -3' miRNA: 3'- aGAGUG-UGUGU----UGGCCCa---UCGCGCcu -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 20204 | 0.69 | 0.791187 |
Target: 5'- uUC-CGCGCGCAgcGCCGGGccGCGCaGGc -3' miRNA: 3'- -AGaGUGUGUGU--UGGCCCauCGCGcCU- -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 142070 | 0.69 | 0.797547 |
Target: 5'- gUUCGCACAuCAACCGaucuGGUAcgcccgcaggaccuGCGCGGGc -3' miRNA: 3'- aGAGUGUGU-GUUGGC----CCAU--------------CGCGCCU- -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 22532 | 0.69 | 0.80025 |
Target: 5'- -gUCGgGCGgGGCCGGGUcAG-GCGGAg -3' miRNA: 3'- agAGUgUGUgUUGGCCCA-UCgCGCCU- -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 58410 | 0.69 | 0.80025 |
Target: 5'- -aUgGCGCGCAGCUGGGc-GUGCGGc -3' miRNA: 3'- agAgUGUGUGUUGGCCCauCGCGCCu -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 3112 | 0.68 | 0.80916 |
Target: 5'- --cCGC-CGCGGCgCGGGUcccaggccgGGCGCGGGg -3' miRNA: 3'- agaGUGuGUGUUG-GCCCA---------UCGCGCCU- -5' |
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29441 | 3' | -55.6 | NC_006151.1 | + | 72553 | 0.68 | 0.826485 |
Target: 5'- --aCACGCGCGGCCgcgcgggaGGGUGgGgGCGGGu -3' miRNA: 3'- agaGUGUGUGUUGG--------CCCAU-CgCGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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