miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29441 3' -55.6 NC_006151.1 + 127361 0.66 0.924959
Target:  5'- gUCUCGCcCugGGCgGGGac-CGCGGGg -3'
miRNA:   3'- -AGAGUGuGugUUGgCCCaucGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 103679 0.66 0.924959
Target:  5'- --gCGCGCGCGGCgGGGgugcuGCGCGc- -3'
miRNA:   3'- agaGUGUGUGUUGgCCCau---CGCGCcu -5'
29441 3' -55.6 NC_006151.1 + 103480 0.66 0.924959
Target:  5'- gCUCGCgGCGCuguggcGCCuGGUGGCGCGc- -3'
miRNA:   3'- aGAGUG-UGUGu-----UGGcCCAUCGCGCcu -5'
29441 3' -55.6 NC_006151.1 + 28266 0.66 0.924959
Target:  5'- cCUCACACGugggccCCGGGga-CGCGGGc -3'
miRNA:   3'- aGAGUGUGUguu---GGCCCaucGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 130292 0.66 0.913621
Target:  5'- ---gGCGCGC-GCCGGccgacGGCGCGGAg -3'
miRNA:   3'- agagUGUGUGuUGGCCca---UCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 88265 0.66 0.913621
Target:  5'- cCUCGacgaaGCGCAccgagaccgccGCCGGGUGGUagacGUGGGg -3'
miRNA:   3'- aGAGUg----UGUGU-----------UGGCCCAUCG----CGCCU- -5'
29441 3' -55.6 NC_006151.1 + 16963 0.66 0.913621
Target:  5'- cCUCGuC-CACucGCCGGcGUGGCGCcaGGAg -3'
miRNA:   3'- aGAGU-GuGUGu-UGGCC-CAUCGCG--CCU- -5'
29441 3' -55.6 NC_006151.1 + 17390 0.66 0.913621
Target:  5'- -gUC-CGCACGACgGGGcgcgUGGCGCGcGGc -3'
miRNA:   3'- agAGuGUGUGUUGgCCC----AUCGCGC-CU- -5'
29441 3' -55.6 NC_006151.1 + 3421 0.66 0.91941
Target:  5'- gUCUCGC---CGGCCGGGacGCgGCGGAa -3'
miRNA:   3'- -AGAGUGuguGUUGGCCCauCG-CGCCU- -5'
29441 3' -55.6 NC_006151.1 + 32564 0.66 0.91941
Target:  5'- gUCUCccggGCACccGCGGCCGGGcGGagggggaaGCGGGa -3'
miRNA:   3'- -AGAG----UGUG--UGUUGGCCCaUCg-------CGCCU- -5'
29441 3' -55.6 NC_006151.1 + 10659 0.67 0.858937
Target:  5'- --gCcCAgGCGGCgGGGgAGCGCGGAg -3'
miRNA:   3'- agaGuGUgUGUUGgCCCaUCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 3722 0.67 0.866551
Target:  5'- gCUCGgGCGCuggguCCGGGccGGCgGCGGGg -3'
miRNA:   3'- aGAGUgUGUGuu---GGCCCa-UCG-CGCCU- -5'
29441 3' -55.6 NC_006151.1 + 104989 0.67 0.866551
Target:  5'- cCUCGCucaACAuCGACCGGGccGCcuccGCGGAg -3'
miRNA:   3'- aGAGUG---UGU-GUUGGCCCauCG----CGCCU- -5'
29441 3' -55.6 NC_006151.1 + 135923 0.67 0.872488
Target:  5'- gUCgugCGCGCGCucuGCCGcGGggagccccucgcGGCGCGGGa -3'
miRNA:   3'- -AGa--GUGUGUGu--UGGC-CCa-----------UCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 96970 0.67 0.886029
Target:  5'- -gUCACACACGACgCggacgcggcacggaGGGUcAGCGgGGGg -3'
miRNA:   3'- agAGUGUGUGUUG-G--------------CCCA-UCGCgCCU- -5'
29441 3' -55.6 NC_006151.1 + 93597 0.67 0.888093
Target:  5'- gCUCGCGCcgauggccugcaGCAGCCGGuccgcgcuGUAGCGCa-- -3'
miRNA:   3'- aGAGUGUG------------UGUUGGCC--------CAUCGCGccu -5'
29441 3' -55.6 NC_006151.1 + 96081 0.67 0.888093
Target:  5'- --gCGCGCGCGGCCGGcGaagAGCaugaGCGGGg -3'
miRNA:   3'- agaGUGUGUGUUGGCC-Ca--UCG----CGCCU- -5'
29441 3' -55.6 NC_006151.1 + 33307 0.67 0.888093
Target:  5'- --gCGCGCGCGugggaccgggACCGGGacagGGgGCGGGg -3'
miRNA:   3'- agaGUGUGUGU----------UGGCCCa---UCgCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 66525 0.67 0.888093
Target:  5'- gCUCGCGCGC-GCCgcgcucuucgGGGgcGCGCGcGGc -3'
miRNA:   3'- aGAGUGUGUGuUGG----------CCCauCGCGC-CU- -5'
29441 3' -55.6 NC_006151.1 + 113409 0.67 0.851117
Target:  5'- gCUCACGCGCGcgcACUGGcUGGCGCu-- -3'
miRNA:   3'- aGAGUGUGUGU---UGGCCcAUCGCGccu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.