miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29441 3' -55.6 NC_006151.1 + 80366 1.09 0.002997
Target:  5'- gUCUCACACACAACCGGGUAGCGCGGAc -3'
miRNA:   3'- -AGAGUGUGUGUUGGCCCAUCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 21484 0.81 0.219517
Target:  5'- gCUCggGCAgGCGGCCGGGgGGCGCGGGc -3'
miRNA:   3'- aGAG--UGUgUGUUGGCCCaUCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 97228 0.79 0.27943
Target:  5'- --aCAUGCACGAguuCCGGGUGGCGCGGc -3'
miRNA:   3'- agaGUGUGUGUU---GGCCCAUCGCGCCu -5'
29441 3' -55.6 NC_006151.1 + 81585 0.77 0.336203
Target:  5'- gUCUCGCGCGCGucGCCGGGgccgccGGCGCGc- -3'
miRNA:   3'- -AGAGUGUGUGU--UGGCCCa-----UCGCGCcu -5'
29441 3' -55.6 NC_006151.1 + 4312 0.76 0.392424
Target:  5'- gCUCgcgggGCACGCGGCCGGGcuGCGCGGc -3'
miRNA:   3'- aGAG-----UGUGUGUUGGCCCauCGCGCCu -5'
29441 3' -55.6 NC_006151.1 + 54820 0.74 0.51054
Target:  5'- gCUgGCGCGCGACgcgcucaCGGGcgAGCGCGGGg -3'
miRNA:   3'- aGAgUGUGUGUUG-------GCCCa-UCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 127458 0.74 0.511517
Target:  5'- ---gGCGCACGaagcGCUGGGcGGCGCGGAa -3'
miRNA:   3'- agagUGUGUGU----UGGCCCaUCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 64330 0.73 0.531218
Target:  5'- cCUCGCAcCACGucGgCGGGaAGCGCGGGc -3'
miRNA:   3'- aGAGUGU-GUGU--UgGCCCaUCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 82616 0.73 0.541172
Target:  5'- --cCGCGCGCGggcGCCGcGGUgGGCGCGGGa -3'
miRNA:   3'- agaGUGUGUGU---UGGC-CCA-UCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 70058 0.73 0.551188
Target:  5'- gCUCGCAgACGcccgaGCCGuGGUAGCGCGu- -3'
miRNA:   3'- aGAGUGUgUGU-----UGGC-CCAUCGCGCcu -5'
29441 3' -55.6 NC_006151.1 + 22997 0.73 0.551188
Target:  5'- aUCUCGgcCGCGCGGgUGGG-GGCGCGGGg -3'
miRNA:   3'- -AGAGU--GUGUGUUgGCCCaUCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 122308 0.73 0.561259
Target:  5'- cCUCACGCgGCAGCUGgcGGUGcGCGUGGAc -3'
miRNA:   3'- aGAGUGUG-UGUUGGC--CCAU-CGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 45448 0.73 0.581544
Target:  5'- -gUCGCACGCAccGCgGGGcGGCGaCGGAc -3'
miRNA:   3'- agAGUGUGUGU--UGgCCCaUCGC-GCCU- -5'
29441 3' -55.6 NC_006151.1 + 103618 0.72 0.601976
Target:  5'- cCUCGCGCAC-GCCGacgcGGUGGCgGCGGc -3'
miRNA:   3'- aGAGUGUGUGuUGGC----CCAUCG-CGCCu -5'
29441 3' -55.6 NC_006151.1 + 44454 0.72 0.632772
Target:  5'- cUCUCGCgACGCGAUgGGGggugAGgGUGGAc -3'
miRNA:   3'- -AGAGUG-UGUGUUGgCCCa---UCgCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 115560 0.72 0.632772
Target:  5'- aCUCGCcCGCGGgCGGGc-GCGCGGGc -3'
miRNA:   3'- aGAGUGuGUGUUgGCCCauCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 19272 0.72 0.632772
Target:  5'- gCUCgugGCGCGCGgggcccACCGGGgccagcGGCGCGGGc -3'
miRNA:   3'- aGAG---UGUGUGU------UGGCCCa-----UCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 136890 0.71 0.643047
Target:  5'- cCUCGCGCcccACGGCUGGGU-GCGCGc- -3'
miRNA:   3'- aGAGUGUG---UGUUGGCCCAuCGCGCcu -5'
29441 3' -55.6 NC_006151.1 + 30732 0.71 0.643047
Target:  5'- cUCUCACGCGgGcCCGGaGUGcCGCGGGc -3'
miRNA:   3'- -AGAGUGUGUgUuGGCC-CAUcGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 106151 0.71 0.683976
Target:  5'- cUCUCGCGCACcuUCGGG--GCGCuGGAc -3'
miRNA:   3'- -AGAGUGUGUGuuGGCCCauCGCG-CCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.