miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29441 3' -55.6 NC_006151.1 + 118764 0.66 0.907592
Target:  5'- --cCACGCGCGugCGgaaccuggacgcGGUGGCGCGcGGc -3'
miRNA:   3'- agaGUGUGUGUugGC------------CCAUCGCGC-CU- -5'
29441 3' -55.6 NC_006151.1 + 139819 0.66 0.907592
Target:  5'- gUCUCcgcgACGCAC-GCgCGGGUcGGCGCGa- -3'
miRNA:   3'- -AGAG----UGUGUGuUG-GCCCA-UCGCGCcu -5'
29441 3' -55.6 NC_006151.1 + 91670 0.66 0.907592
Target:  5'- -aUCACcUGC-GCCGGGUGGUGCGc- -3'
miRNA:   3'- agAGUGuGUGuUGGCCCAUCGCGCcu -5'
29441 3' -55.6 NC_006151.1 + 4195 0.66 0.905737
Target:  5'- cCUCGagGCaggcgggcccgaggGCGGCCGGGgcgcgggcgGGCGCGGGc -3'
miRNA:   3'- aGAGUg-UG--------------UGUUGGCCCa--------UCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 96328 0.66 0.903861
Target:  5'- --cCGCGCGCGuagagcGCCGGGUAGgCcucccgccagaaccaGCGGAg -3'
miRNA:   3'- agaGUGUGUGU------UGGCCCAUC-G---------------CGCCU- -5'
29441 3' -55.6 NC_006151.1 + 50367 0.66 0.901326
Target:  5'- gUCUC-CGC-CGGCgGGGgcgAGaCGCGGGc -3'
miRNA:   3'- -AGAGuGUGuGUUGgCCCa--UC-GCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 86724 0.66 0.901326
Target:  5'- -gUCGCgGCGCGccgccgcgagGCCGGcGU-GCGCGGAc -3'
miRNA:   3'- agAGUG-UGUGU----------UGGCC-CAuCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 88542 0.66 0.894826
Target:  5'- --gCGCACGCugcGCCgcGGGUAGUagucGCGGAc -3'
miRNA:   3'- agaGUGUGUGu--UGG--CCCAUCG----CGCCU- -5'
29441 3' -55.6 NC_006151.1 + 113016 0.66 0.894163
Target:  5'- --cCACACGgGcgacgacgcgugcGCCGGGUGcuGCGCGGc -3'
miRNA:   3'- agaGUGUGUgU-------------UGGCCCAU--CGCGCCu -5'
29441 3' -55.6 NC_006151.1 + 72762 0.66 0.89283
Target:  5'- gCUgGCGCACAGCggCGGGUacgccuccuggaagAGCGCGc- -3'
miRNA:   3'- aGAgUGUGUGUUG--GCCCA--------------UCGCGCcu -5'
29441 3' -55.6 NC_006151.1 + 93597 0.67 0.888093
Target:  5'- gCUCGCGCcgauggccugcaGCAGCCGGuccgcgcuGUAGCGCa-- -3'
miRNA:   3'- aGAGUGUG------------UGUUGGCC--------CAUCGCGccu -5'
29441 3' -55.6 NC_006151.1 + 96081 0.67 0.888093
Target:  5'- --gCGCGCGCGGCCGGcGaagAGCaugaGCGGGg -3'
miRNA:   3'- agaGUGUGUGUUGGCC-Ca--UCG----CGCCU- -5'
29441 3' -55.6 NC_006151.1 + 33307 0.67 0.888093
Target:  5'- --gCGCGCGCGugggaccgggACCGGGacagGGgGCGGGg -3'
miRNA:   3'- agaGUGUGUGU----------UGGCCCa---UCgCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 66525 0.67 0.888093
Target:  5'- gCUCGCGCGC-GCCgcgcucuucgGGGgcGCGCGcGGc -3'
miRNA:   3'- aGAGUGUGUGuUGG----------CCCauCGCGC-CU- -5'
29441 3' -55.6 NC_006151.1 + 102673 0.67 0.888093
Target:  5'- aCUUugACGCcgugGACgCGGGggcgcccGGCGCGGGc -3'
miRNA:   3'- aGAGugUGUG----UUG-GCCCa------UCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 96970 0.67 0.886029
Target:  5'- -gUCACACACGACgCggacgcggcacggaGGGUcAGCGgGGGg -3'
miRNA:   3'- agAGUGUGUGUUG-G--------------CCCA-UCGCgCCU- -5'
29441 3' -55.6 NC_006151.1 + 135923 0.67 0.872488
Target:  5'- gUCgugCGCGCGCucuGCCGcGGggagccccucgcGGCGCGGGa -3'
miRNA:   3'- -AGa--GUGUGUGu--UGGC-CCa-----------UCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 104989 0.67 0.866551
Target:  5'- cCUCGCucaACAuCGACCGGGccGCcuccGCGGAg -3'
miRNA:   3'- aGAGUG---UGU-GUUGGCCCauCG----CGCCU- -5'
29441 3' -55.6 NC_006151.1 + 3722 0.67 0.866551
Target:  5'- gCUCGgGCGCuggguCCGGGccGGCgGCGGGg -3'
miRNA:   3'- aGAGUgUGUGuu---GGCCCa-UCG-CGCCU- -5'
29441 3' -55.6 NC_006151.1 + 10659 0.67 0.858937
Target:  5'- --gCcCAgGCGGCgGGGgAGCGCGGAg -3'
miRNA:   3'- agaGuGUgUGUUGgCCCaUCGCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.