miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29441 3' -55.6 NC_006151.1 + 39216 0.67 0.851117
Target:  5'- aCUCGCACGCcugGGCCGGGaacuggaccgGGCGCc-- -3'
miRNA:   3'- aGAGUGUGUG---UUGGCCCa---------UCGCGccu -5'
29441 3' -55.6 NC_006151.1 + 113409 0.67 0.851117
Target:  5'- gCUCACGCGCGcgcACUGGcUGGCGCu-- -3'
miRNA:   3'- aGAGUGUGUGU---UGGCCcAUCGCGccu -5'
29441 3' -55.6 NC_006151.1 + 96772 0.68 0.843097
Target:  5'- gCUCgACACggggaggugaGCGgagagucccgaGCCGGGgcGCGCGGGc -3'
miRNA:   3'- aGAG-UGUG----------UGU-----------UGGCCCauCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 130809 0.68 0.840653
Target:  5'- --gUACGCgGCGuCCGGGUcccgcucgaggcgcGGCGCGGAg -3'
miRNA:   3'- agaGUGUG-UGUuGGCCCA--------------UCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 81487 0.68 0.834884
Target:  5'- gCUCGuucCACGCGGCCGucGGcgagAGCGCGGc -3'
miRNA:   3'- aGAGU---GUGUGUUGGC--CCa---UCGCGCCu -5'
29441 3' -55.6 NC_006151.1 + 64724 0.68 0.834884
Target:  5'- cCUCGcCGCAgAACCGGGccacgagcucgAGCaGCGGGg -3'
miRNA:   3'- aGAGU-GUGUgUUGGCCCa----------UCG-CGCCU- -5'
29441 3' -55.6 NC_006151.1 + 72553 0.68 0.826485
Target:  5'- --aCACGCGCGGCCgcgcgggaGGGUGgGgGCGGGu -3'
miRNA:   3'- agaGUGUGUGUUGG--------CCCAU-CgCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 3112 0.68 0.80916
Target:  5'- --cCGC-CGCGGCgCGGGUcccaggccgGGCGCGGGg -3'
miRNA:   3'- agaGUGuGUGUUG-GCCCA---------UCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 58410 0.69 0.80025
Target:  5'- -aUgGCGCGCAGCUGGGc-GUGCGGc -3'
miRNA:   3'- agAgUGUGUGUUGGCCCauCGCGCCu -5'
29441 3' -55.6 NC_006151.1 + 22532 0.69 0.80025
Target:  5'- -gUCGgGCGgGGCCGGGUcAG-GCGGAg -3'
miRNA:   3'- agAGUgUGUgUUGGCCCA-UCgCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 142070 0.69 0.797547
Target:  5'- gUUCGCACAuCAACCGaucuGGUAcgcccgcaggaccuGCGCGGGc -3'
miRNA:   3'- aGAGUGUGU-GUUGGC----CCAU--------------CGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 20204 0.69 0.791187
Target:  5'- uUC-CGCGCGCAgcGCCGGGccGCGCaGGc -3'
miRNA:   3'- -AGaGUGUGUGU--UGGCCCauCGCGcCU- -5'
29441 3' -55.6 NC_006151.1 + 96584 0.69 0.791187
Target:  5'- cCUCGCgGCGCGaggcGCCGGGcgcgGGCGCGc- -3'
miRNA:   3'- aGAGUG-UGUGU----UGGCCCa---UCGCGCcu -5'
29441 3' -55.6 NC_006151.1 + 139616 0.69 0.785679
Target:  5'- gUC-CGgGCGCGGCUGGGggccauccggcgccGGCGCGGGg -3'
miRNA:   3'- -AGaGUgUGUGUUGGCCCa-------------UCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 80672 0.69 0.78198
Target:  5'- --gCGCACGCAGagaguCUGGGUucgcggcccGGCGCGGGc -3'
miRNA:   3'- agaGUGUGUGUU-----GGCCCA---------UCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 651 0.69 0.78198
Target:  5'- gCUUccgGgGCGCGGCCGGGgcgGGCuccGCGGAu -3'
miRNA:   3'- aGAG---UgUGUGUUGGCCCa--UCG---CGCCU- -5'
29441 3' -55.6 NC_006151.1 + 57142 0.69 0.76412
Target:  5'- cCUgCGCACGCGGCgGGGgcgagggcgucccccGGCGCGGc -3'
miRNA:   3'- aGA-GUGUGUGUUGgCCCa--------------UCGCGCCu -5'
29441 3' -55.6 NC_006151.1 + 133494 0.69 0.763168
Target:  5'- -gUCAccUugGCGGCgCGGGgGGCGCGGGa -3'
miRNA:   3'- agAGU--GugUGUUG-GCCCaUCGCGCCU- -5'
29441 3' -55.6 NC_006151.1 + 95300 0.69 0.763168
Target:  5'- --aCGCGCGCGGcCCGGcGcAGCGCGGc -3'
miRNA:   3'- agaGUGUGUGUU-GGCC-CaUCGCGCCu -5'
29441 3' -55.6 NC_006151.1 + 56182 0.69 0.753581
Target:  5'- cUCUCGCugGCcguGCCGccGGUGGCGCu-- -3'
miRNA:   3'- -AGAGUGugUGu--UGGC--CCAUCGCGccu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.