miRNA display CGI


Results 41 - 60 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29443 3' -57.6 NC_006151.1 + 131485 0.67 0.791271
Target:  5'- aGCACGUCCuGCaggugcaCCaGGAGCCCcgcgcggGGGAACg -3'
miRNA:   3'- -UGUGUAGG-CGg------GG-CUUCGGG-------CUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 49708 0.67 0.791271
Target:  5'- cGCACccCCuCCCCGGGaggggguGCUCGGGAGCg -3'
miRNA:   3'- -UGUGuaGGcGGGGCUU-------CGGGCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 50141 0.67 0.783063
Target:  5'- cACGCGa--GCCCCGcgcgcGCCCGAcGAGCg -3'
miRNA:   3'- -UGUGUaggCGGGGCuu---CGGGCU-CUUG- -5'
29443 3' -57.6 NC_006151.1 + 103254 0.67 0.783063
Target:  5'- gGCACAUCCGCgCCaUGGgcGGCCaCGugcuGAGCc -3'
miRNA:   3'- -UGUGUAGGCG-GG-GCU--UCGG-GCu---CUUG- -5'
29443 3' -57.6 NC_006151.1 + 128998 0.67 0.783063
Target:  5'- cCACGUCCGCCgUGAuGCCCuucAGcGCg -3'
miRNA:   3'- uGUGUAGGCGGgGCUuCGGGc--UCuUG- -5'
29443 3' -57.6 NC_006151.1 + 16905 0.67 0.783063
Target:  5'- cCGCGcCCGCCCCGgcGCCgGcGcACg -3'
miRNA:   3'- uGUGUaGGCGGGGCuuCGGgCuCuUG- -5'
29443 3' -57.6 NC_006151.1 + 18736 0.67 0.783063
Target:  5'- uCGCGUcgucgCCGCCgCCGggGCCCcacGGggUg -3'
miRNA:   3'- uGUGUA-----GGCGG-GGCuuCGGGc--UCuuG- -5'
29443 3' -57.6 NC_006151.1 + 142272 0.67 0.782144
Target:  5'- aGCGCc-CCGUCCCGGcGGCCagaccggccgggaCGAGAGCg -3'
miRNA:   3'- -UGUGuaGGCGGGGCU-UCGG-------------GCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 129796 0.67 0.773814
Target:  5'- -gGCGUggGCCCgcaUGAGGCCCGuGAGCg -3'
miRNA:   3'- ugUGUAggCGGG---GCUUCGGGCuCUUG- -5'
29443 3' -57.6 NC_006151.1 + 14398 0.67 0.773814
Target:  5'- cGCGCGUCCGUCgCCuagguGAGUCgGGGGGCu -3'
miRNA:   3'- -UGUGUAGGCGG-GGc----UUCGGgCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 123765 0.67 0.772883
Target:  5'- gGCGCGg--GCCCCGGgggcaucGGCCCGGGcACc -3'
miRNA:   3'- -UGUGUaggCGGGGCU-------UCGGGCUCuUG- -5'
29443 3' -57.6 NC_006151.1 + 101992 0.67 0.768205
Target:  5'- cGCGCAaguUCCGCCCgcgcacccgCGAGcccaugggcuucgccGUCCGGGAGCu -3'
miRNA:   3'- -UGUGU---AGGCGGG---------GCUU---------------CGGGCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 97707 0.67 0.764441
Target:  5'- -uGCGUCacgugGCCCaGGAGCCCcccGAGGACg -3'
miRNA:   3'- ugUGUAGg----CGGGgCUUCGGG---CUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 23236 0.67 0.764441
Target:  5'- uCACcUCCucGCCCUcgGggGCCuCGGGGGCa -3'
miRNA:   3'- uGUGuAGG--CGGGG--CuuCGG-GCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 87291 0.67 0.764441
Target:  5'- uGCACGcgCCGCCCCccucGCCCGuGGcGCa -3'
miRNA:   3'- -UGUGUa-GGCGGGGcuu-CGGGCuCU-UG- -5'
29443 3' -57.6 NC_006151.1 + 33221 0.67 0.764441
Target:  5'- cACGCGgggCGCCCCGGcgggcgggagggGGUCCGGGGGa -3'
miRNA:   3'- -UGUGUag-GCGGGGCU------------UCGGGCUCUUg -5'
29443 3' -57.6 NC_006151.1 + 31968 0.67 0.764441
Target:  5'- gACGCGggaCGUgCCCGccGCCUGGGAGCc -3'
miRNA:   3'- -UGUGUag-GCG-GGGCuuCGGGCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 38105 0.67 0.764441
Target:  5'- cGCGC-UCCGCgacgcgaucCCCGGggccGGCCCGGccGAGCg -3'
miRNA:   3'- -UGUGuAGGCG---------GGGCU----UCGGGCU--CUUG- -5'
29443 3' -57.6 NC_006151.1 + 84779 0.67 0.764441
Target:  5'- gACGCGgcgCgCGCCgCCGAGgaggcGCCCGAGGc- -3'
miRNA:   3'- -UGUGUa--G-GCGG-GGCUU-----CGGGCUCUug -5'
29443 3' -57.6 NC_006151.1 + 36003 0.67 0.763497
Target:  5'- uCGCGUCCgGCCCCGAcggcggcAGCC--AGGGCu -3'
miRNA:   3'- uGUGUAGG-CGGGGCU-------UCGGgcUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.