miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29443 3' -57.6 NC_006151.1 + 48711 0.66 0.818626
Target:  5'- cCGCcgCCGCCC---GGCCCGcgaAGGGCa -3'
miRNA:   3'- uGUGuaGGCGGGgcuUCGGGC---UCUUG- -5'
29443 3' -57.6 NC_006151.1 + 107713 0.66 0.818626
Target:  5'- gGCACcaaggCCGCCgCGGcccccaagcagcAGcCCCGGGAGCc -3'
miRNA:   3'- -UGUGua---GGCGGgGCU------------UC-GGGCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 128446 0.66 0.818626
Target:  5'- -gGCGUCUcgGCCCaCGuGGCgCCGAGGAUc -3'
miRNA:   3'- ugUGUAGG--CGGG-GCuUCG-GGCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 137259 0.66 0.818626
Target:  5'- uCGCcUCgCGCgCCCGguGCCCGcGGGCa -3'
miRNA:   3'- uGUGuAG-GCG-GGGCuuCGGGCuCUUG- -5'
29443 3' -57.6 NC_006151.1 + 129908 0.66 0.818626
Target:  5'- aGCACGg-CGUaCUCGgcGUCCGAGAGCg -3'
miRNA:   3'- -UGUGUagGCG-GGGCuuCGGGCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 136156 0.66 0.818626
Target:  5'- gACGCuggCCGCCuuCCGgcGCCucuaCGGGAACc -3'
miRNA:   3'- -UGUGua-GGCGG--GGCuuCGG----GCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 3873 0.66 0.809967
Target:  5'- gGCGCccgCCGCCgCCGgcGCCgGcgcuGGGACg -3'
miRNA:   3'- -UGUGua-GGCGG-GGCuuCGGgC----UCUUG- -5'
29443 3' -57.6 NC_006151.1 + 139777 0.66 0.809967
Target:  5'- gACGCG-CC-CCCCGAucgucuGUCgGAGAGCg -3'
miRNA:   3'- -UGUGUaGGcGGGGCUu-----CGGgCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 88999 0.66 0.809967
Target:  5'- cCGCGUCC-CCCacccGCgCCGAGAACa -3'
miRNA:   3'- uGUGUAGGcGGGgcuuCG-GGCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 55453 0.66 0.809967
Target:  5'- gGCGCcgCCgGCCCC---GCCgGGGGGCg -3'
miRNA:   3'- -UGUGuaGG-CGGGGcuuCGGgCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 66768 0.67 0.804694
Target:  5'- cGCgACggCCGCCCucgggaCGGcggcggcggcggcggGGCCCGGGGACg -3'
miRNA:   3'- -UG-UGuaGGCGGG------GCU---------------UCGGGCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 57747 0.67 0.801147
Target:  5'- gGCGCG-CCGCagCCGcucguGGCCCGGGcACa -3'
miRNA:   3'- -UGUGUaGGCGg-GGCu----UCGGGCUCuUG- -5'
29443 3' -57.6 NC_006151.1 + 101766 0.67 0.801147
Target:  5'- cGCGCcgCCGaCgCGggGCCCcGGGGCc -3'
miRNA:   3'- -UGUGuaGGCgGgGCuuCGGGcUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 24536 0.67 0.801147
Target:  5'- aGCGCG-CgGCCCCGAGGUCCccuAGGcACa -3'
miRNA:   3'- -UGUGUaGgCGGGGCUUCGGGc--UCU-UG- -5'
29443 3' -57.6 NC_006151.1 + 133451 0.67 0.792176
Target:  5'- gGCGCucUUgGCCCCGGucgaGGCCCGcGAGg -3'
miRNA:   3'- -UGUGu-AGgCGGGGCU----UCGGGCuCUUg -5'
29443 3' -57.6 NC_006151.1 + 117873 0.67 0.792176
Target:  5'- uCGCGUUCGCCCCucGGCgCCGAc--- -3'
miRNA:   3'- uGUGUAGGCGGGGcuUCG-GGCUcuug -5'
29443 3' -57.6 NC_006151.1 + 87187 0.67 0.792176
Target:  5'- gGCGCcgCCGCagcugcugccgCCCGggGCCguCGuGGGACa -3'
miRNA:   3'- -UGUGuaGGCG-----------GGGCuuCGG--GC-UCUUG- -5'
29443 3' -57.6 NC_006151.1 + 64195 0.67 0.792176
Target:  5'- cCGCGaUCGCCCCGGgcaGGUCCGGcguGGGCg -3'
miRNA:   3'- uGUGUaGGCGGGGCU---UCGGGCU---CUUG- -5'
29443 3' -57.6 NC_006151.1 + 41598 0.67 0.792176
Target:  5'- cCGCGgagcCCGCCCCGGccgcGCCCcGGAAg -3'
miRNA:   3'- uGUGUa---GGCGGGGCUu---CGGGcUCUUg -5'
29443 3' -57.6 NC_006151.1 + 19337 0.67 0.792176
Target:  5'- aACACGgcccgCgGCCCCGAGGCgUCGuGcAGCg -3'
miRNA:   3'- -UGUGUa----GgCGGGGCUUCG-GGCuC-UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.