miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29443 3' -57.6 NC_006151.1 + 122455 0.66 0.842761
Target:  5'- -gGCGUCCacggcggcggcggGCgCCGAGGCC-GGGGACg -3'
miRNA:   3'- ugUGUAGG-------------CGgGGCUUCGGgCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 50714 0.66 0.838709
Target:  5'- gGCgACggCCGCCCCGGcgguccagcugccccGGCCCcggcaacGGAGCa -3'
miRNA:   3'- -UG-UGuaGGCGGGGCU---------------UCGGGc------UCUUG- -5'
29443 3' -57.6 NC_006151.1 + 37239 0.66 0.838709
Target:  5'- -gGCccCgGCCCCGGAGCCCGcccggcccccgcgcaGGAAg -3'
miRNA:   3'- ugUGuaGgCGGGGCUUCGGGC---------------UCUUg -5'
29443 3' -57.6 NC_006151.1 + 115484 0.66 0.835433
Target:  5'- cACACGUCguCGUaCgCGAuGCCCGAGAAg -3'
miRNA:   3'- -UGUGUAG--GCG-GgGCUuCGGGCUCUUg -5'
29443 3' -57.6 NC_006151.1 + 63233 0.66 0.827118
Target:  5'- aACGCGUCCGCgUCGAAGgucagcacCUCGccGGAGCu -3'
miRNA:   3'- -UGUGUAGGCGgGGCUUC--------GGGC--UCUUG- -5'
29443 3' -57.6 NC_006151.1 + 69958 0.66 0.835433
Target:  5'- -aACAgCC-CCCCGggGCCgCGcGGGCg -3'
miRNA:   3'- ugUGUaGGcGGGGCuuCGG-GCuCUUG- -5'
29443 3' -57.6 NC_006151.1 + 98051 0.66 0.835433
Target:  5'- aGCACcaCCaGCCCCGGgcgcucGGCCUGGGGcucGCa -3'
miRNA:   3'- -UGUGuaGG-CGGGGCU------UCGGGCUCU---UG- -5'
29443 3' -57.6 NC_006151.1 + 14087 0.66 0.835433
Target:  5'- gGCACucgCCGCCCCaacGAcGCCgaCGGGGAUc -3'
miRNA:   3'- -UGUGua-GGCGGGG---CUuCGG--GCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 53269 0.66 0.835433
Target:  5'- gGCACAgcugCCGCgcgugCUCGAAGCgCGAcucGAGCg -3'
miRNA:   3'- -UGUGUa---GGCG-----GGGCUUCGgGCU---CUUG- -5'
29443 3' -57.6 NC_006151.1 + 141960 0.66 0.835433
Target:  5'- cCACGUCCgGCUcugcgggauCCGGucgggcGGCCCGGGAAa -3'
miRNA:   3'- uGUGUAGG-CGG---------GGCU------UCGGGCUCUUg -5'
29443 3' -57.6 NC_006151.1 + 19337 0.67 0.792176
Target:  5'- aACACGgcccgCgGCCCCGAGGCgUCGuGcAGCg -3'
miRNA:   3'- -UGUGUa----GgCGGGGCUUCG-GGCuC-UUG- -5'
29443 3' -57.6 NC_006151.1 + 41598 0.67 0.792176
Target:  5'- cCGCGgagcCCGCCCCGGccgcGCCCcGGAAg -3'
miRNA:   3'- uGUGUa---GGCGGGGCUu---CGGGcUCUUg -5'
29443 3' -57.6 NC_006151.1 + 64195 0.67 0.792176
Target:  5'- cCGCGaUCGCCCCGGgcaGGUCCGGcguGGGCg -3'
miRNA:   3'- uGUGUaGGCGGGGCU---UCGGGCU---CUUG- -5'
29443 3' -57.6 NC_006151.1 + 87187 0.67 0.792176
Target:  5'- gGCGCcgCCGCagcugcugccgCCCGggGCCguCGuGGGACa -3'
miRNA:   3'- -UGUGuaGGCG-----------GGGCuuCGG--GC-UCUUG- -5'
29443 3' -57.6 NC_006151.1 + 117873 0.67 0.792176
Target:  5'- uCGCGUUCGCCCCucGGCgCCGAc--- -3'
miRNA:   3'- uGUGUAGGCGGGGcuUCG-GGCUcuug -5'
29443 3' -57.6 NC_006151.1 + 133451 0.67 0.792176
Target:  5'- gGCGCucUUgGCCCCGGucgaGGCCCGcGAGg -3'
miRNA:   3'- -UGUGu-AGgCGGGGCU----UCGGGCuCUUg -5'
29443 3' -57.6 NC_006151.1 + 57747 0.67 0.801147
Target:  5'- gGCGCG-CCGCagCCGcucguGGCCCGGGcACa -3'
miRNA:   3'- -UGUGUaGGCGg-GGCu----UCGGGCUCuUG- -5'
29443 3' -57.6 NC_006151.1 + 101766 0.67 0.801147
Target:  5'- cGCGCcgCCGaCgCGggGCCCcGGGGCc -3'
miRNA:   3'- -UGUGuaGGCgGgGCuuCGGGcUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 24536 0.67 0.801147
Target:  5'- aGCGCG-CgGCCCCGAGGUCCccuAGGcACa -3'
miRNA:   3'- -UGUGUaGgCGGGGCUUCGGGc--UCU-UG- -5'
29443 3' -57.6 NC_006151.1 + 131485 0.67 0.791271
Target:  5'- aGCACGUCCuGCaggugcaCCaGGAGCCCcgcgcggGGGAACg -3'
miRNA:   3'- -UGUGUAGG-CGg------GG-CUUCGGG-------CUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.