miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29443 3' -57.6 NC_006151.1 + 19337 0.67 0.792176
Target:  5'- aACACGgcccgCgGCCCCGAGGCgUCGuGcAGCg -3'
miRNA:   3'- -UGUGUa----GgCGGGGCUUCG-GGCuC-UUG- -5'
29443 3' -57.6 NC_006151.1 + 19478 0.75 0.347009
Target:  5'- gGCAgGUagucgccgaugccCCGCUCCGggGCCuCGGGGACg -3'
miRNA:   3'- -UGUgUA-------------GGCGGGGCuuCGG-GCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 21887 0.71 0.534474
Target:  5'- gUugAaCCGCCCCGGAGCCaccauGAGCa -3'
miRNA:   3'- uGugUaGGCGGGGCUUCGGgcu--CUUG- -5'
29443 3' -57.6 NC_006151.1 + 22305 0.71 0.534474
Target:  5'- cCACGUCCGCgCCGAGcgucGUCCGGGcGACc -3'
miRNA:   3'- uGUGUAGGCGgGGCUU----CGGGCUC-UUG- -5'
29443 3' -57.6 NC_006151.1 + 22843 0.74 0.371491
Target:  5'- aGCGCG-CUGCCCagGAAGCCCaGGAGCa -3'
miRNA:   3'- -UGUGUaGGCGGGg-CUUCGGGcUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 23236 0.67 0.764441
Target:  5'- uCACcUCCucGCCCUcgGggGCCuCGGGGGCa -3'
miRNA:   3'- uGUGuAGG--CGGGG--CuuCGG-GCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 24536 0.67 0.801147
Target:  5'- aGCGCG-CgGCCCCGAGGUCCccuAGGcACa -3'
miRNA:   3'- -UGUGUaGgCGGGGCUUCGGGc--UCU-UG- -5'
29443 3' -57.6 NC_006151.1 + 27158 0.78 0.228627
Target:  5'- uCACGUCgGCCCCGAGGCgCCGcgugucGGGGCg -3'
miRNA:   3'- uGUGUAGgCGGGGCUUCG-GGC------UCUUG- -5'
29443 3' -57.6 NC_006151.1 + 30565 0.7 0.625084
Target:  5'- cGCACGcgCCGUCCCGcGGCCCcgucGGGCg -3'
miRNA:   3'- -UGUGUa-GGCGGGGCuUCGGGcu--CUUG- -5'
29443 3' -57.6 NC_006151.1 + 31024 0.71 0.574364
Target:  5'- cCGCcgCgGCCCuCGcGGCCCGGGAGa -3'
miRNA:   3'- uGUGuaGgCGGG-GCuUCGGGCUCUUg -5'
29443 3' -57.6 NC_006151.1 + 31211 0.68 0.735657
Target:  5'- cCGCGUCCaggccgggcCCCCGGccggccGGCCCGGcGAGCg -3'
miRNA:   3'- uGUGUAGGc--------GGGGCU------UCGGGCU-CUUG- -5'
29443 3' -57.6 NC_006151.1 + 31968 0.67 0.764441
Target:  5'- gACGCGggaCGUgCCCGccGCCUGGGAGCc -3'
miRNA:   3'- -UGUGUag-GCG-GGGCuuCGGGCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 32330 0.76 0.296753
Target:  5'- cCGCGUCCccauCUCCGAGGCCCGAGGc- -3'
miRNA:   3'- uGUGUAGGc---GGGGCUUCGGGCUCUug -5'
29443 3' -57.6 NC_006151.1 + 33221 0.67 0.764441
Target:  5'- cACGCGgggCGCCCCGGcgggcgggagggGGUCCGGGGGa -3'
miRNA:   3'- -UGUGUag-GCGGGGCU------------UCGGGCUCUUg -5'
29443 3' -57.6 NC_006151.1 + 36003 0.67 0.763497
Target:  5'- uCGCGUCCgGCCCCGAcggcggcAGCC--AGGGCu -3'
miRNA:   3'- uGUGUAGG-CGGGGCU-------UCGGgcUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 37239 0.66 0.838709
Target:  5'- -gGCccCgGCCCCGGAGCCCGcccggcccccgcgcaGGAAg -3'
miRNA:   3'- ugUGuaGgCGGGGCUUCGGGC---------------UCUUg -5'
29443 3' -57.6 NC_006151.1 + 37395 0.71 0.544365
Target:  5'- cCGCGUCCGCUaCGGcGGCgCCGGGGACu -3'
miRNA:   3'- uGUGUAGGCGGgGCU-UCG-GGCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 38105 0.67 0.764441
Target:  5'- cGCGC-UCCGCgacgcgaucCCCGGggccGGCCCGGccGAGCg -3'
miRNA:   3'- -UGUGuAGGCG---------GGGCU----UCGGGCU--CUUG- -5'
29443 3' -57.6 NC_006151.1 + 38320 0.68 0.742454
Target:  5'- cCGCGgagcCCGCgCCCGGccugcccccgcucuGGCCCGAGcAGCc -3'
miRNA:   3'- uGUGUa---GGCG-GGGCU--------------UCGGGCUC-UUG- -5'
29443 3' -57.6 NC_006151.1 + 38530 0.7 0.625084
Target:  5'- cCGCcgCCGgCCCGGAcccagcGCCCGAGcGGCg -3'
miRNA:   3'- uGUGuaGGCgGGGCUU------CGGGCUC-UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.