miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29443 3' -57.6 NC_006151.1 + 2172 0.71 0.554314
Target:  5'- cGC-CGgggCCgGCCCCGgcGCCCGAGGc- -3'
miRNA:   3'- -UGuGUa--GG-CGGGGCuuCGGGCUCUug -5'
29443 3' -57.6 NC_006151.1 + 2503 0.71 0.544365
Target:  5'- gGCGCccgcgucaaaGUCCGgguCCCCG-AGCCCGAGcGCg -3'
miRNA:   3'- -UGUG----------UAGGC---GGGGCuUCGGGCUCuUG- -5'
29443 3' -57.6 NC_006151.1 + 3873 0.66 0.809967
Target:  5'- gGCGCccgCCGCCgCCGgcGCCgGcgcuGGGACg -3'
miRNA:   3'- -UGUGua-GGCGG-GGCuuCGGgC----UCUUG- -5'
29443 3' -57.6 NC_006151.1 + 4179 0.7 0.584454
Target:  5'- aGCGCggCCGucaccuCCUCGAggcaggcgGGCCCGAGGGCg -3'
miRNA:   3'- -UGUGuaGGC------GGGGCU--------UCGGGCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 5626 0.72 0.476656
Target:  5'- gGCGCcgCCGCCgCCG-GGCgCCGAGAc- -3'
miRNA:   3'- -UGUGuaGGCGG-GGCuUCG-GGCUCUug -5'
29443 3' -57.6 NC_006151.1 + 5933 0.73 0.439881
Target:  5'- gGCcCGgagCCGgCCCGGgaccggGGCCCGAGGACg -3'
miRNA:   3'- -UGuGUa--GGCgGGGCU------UCGGGCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 6929 0.68 0.745353
Target:  5'- uGCAUGUCCgGCCCCGAgggcgccaucuuGGCCCcucGACg -3'
miRNA:   3'- -UGUGUAGG-CGGGGCU------------UCGGGcucUUG- -5'
29443 3' -57.6 NC_006151.1 + 8306 0.75 0.355562
Target:  5'- cCGCGUcCCGCCCCGA-GCCCccGGGGCg -3'
miRNA:   3'- uGUGUA-GGCGGGGCUuCGGGc-UCUUG- -5'
29443 3' -57.6 NC_006151.1 + 8366 0.69 0.645461
Target:  5'- gGCGCGaggcccCCGCCCCcgggGggGUCCGGGAu- -3'
miRNA:   3'- -UGUGUa-----GGCGGGG----CuuCGGGCUCUug -5'
29443 3' -57.6 NC_006151.1 + 9885 0.71 0.544365
Target:  5'- gGCGCuUCCuCCCCGGcGGUCCGGGAAg -3'
miRNA:   3'- -UGUGuAGGcGGGGCU-UCGGGCUCUUg -5'
29443 3' -57.6 NC_006151.1 + 11212 0.72 0.514892
Target:  5'- gGCGCGUCCGggaaggcuucUCCCG-GGCCgCGAGGGCc -3'
miRNA:   3'- -UGUGUAGGC----------GGGGCuUCGG-GCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 13183 0.69 0.665795
Target:  5'- cCGCggCCGUCUCGggGCCCGc-GGCg -3'
miRNA:   3'- uGUGuaGGCGGGGCuuCGGGCucUUG- -5'
29443 3' -57.6 NC_006151.1 + 14087 0.66 0.835433
Target:  5'- gGCACucgCCGCCCCaacGAcGCCgaCGGGGAUc -3'
miRNA:   3'- -UGUGua-GGCGGGG---CUuCGG--GCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 14131 0.69 0.635274
Target:  5'- gGCGCGgagCgCGCCCCGA-GCCgaCGAGGAg -3'
miRNA:   3'- -UGUGUa--G-GCGGGGCUuCGG--GCUCUUg -5'
29443 3' -57.6 NC_006151.1 + 14398 0.67 0.773814
Target:  5'- cGCGCGUCCGUCgCCuagguGAGUCgGGGGGCu -3'
miRNA:   3'- -UGUGUAGGCGG-GGc----UUCGGgCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 15097 0.67 0.754951
Target:  5'- cACGCGg-CGCCUCGggGCCgaCGuGAACc -3'
miRNA:   3'- -UGUGUagGCGGGGCuuCGG--GCuCUUG- -5'
29443 3' -57.6 NC_006151.1 + 16905 0.67 0.783063
Target:  5'- cCGCGcCCGCCCCGgcGCCgGcGcACg -3'
miRNA:   3'- uGUGUaGGCGGGGCuuCGGgCuCuUG- -5'
29443 3' -57.6 NC_006151.1 + 17094 0.69 0.686021
Target:  5'- gGCGCG--CGCCCguCGggGCgCCGGGGGCu -3'
miRNA:   3'- -UGUGUagGCGGG--GCuuCG-GGCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 18539 0.68 0.735657
Target:  5'- cCGCGUCgGCaCCCGGaacGGCCgCGAGGc- -3'
miRNA:   3'- uGUGUAGgCG-GGGCU---UCGG-GCUCUug -5'
29443 3' -57.6 NC_006151.1 + 18736 0.67 0.783063
Target:  5'- uCGCGUcgucgCCGCCgCCGggGCCCcacGGggUg -3'
miRNA:   3'- uGUGUA-----GGCGG-GGCuuCGGGc--UCuuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.