miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29443 3' -57.6 NC_006151.1 + 142272 0.67 0.782144
Target:  5'- aGCGCc-CCGUCCCGGcGGCCagaccggccgggaCGAGAGCg -3'
miRNA:   3'- -UGUGuaGGCGGGGCU-UCGG-------------GCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 141960 0.66 0.835433
Target:  5'- cCACGUCCgGCUcugcgggauCCGGucgggcGGCCCGGGAAa -3'
miRNA:   3'- uGUGUAGG-CGG---------GGCU------UCGGGCUCUUg -5'
29443 3' -57.6 NC_006151.1 + 141797 0.7 0.6149
Target:  5'- cGCGgGUCgGUCCCGc--CCCGAGGGCa -3'
miRNA:   3'- -UGUgUAGgCGGGGCuucGGGCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 141069 0.68 0.696072
Target:  5'- aACACGaCagacUCCCGGAGCaCCGGGAGCa -3'
miRNA:   3'- -UGUGUaGgc--GGGGCUUCG-GGCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 139777 0.66 0.809967
Target:  5'- gACGCG-CC-CCCCGAucgucuGUCgGAGAGCg -3'
miRNA:   3'- -UGUGUaGGcGGGGCUu-----CGGgCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 139061 0.66 0.827118
Target:  5'- cGCuCAUCCuCCUCGAGcucgggcuccGCCUGGGGGCg -3'
miRNA:   3'- -UGuGUAGGcGGGGCUU----------CGGGCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 137259 0.66 0.818626
Target:  5'- uCGCcUCgCGCgCCCGguGCCCGcGGGCa -3'
miRNA:   3'- uGUGuAG-GCG-GGGCuuCGGGCuCUUG- -5'
29443 3' -57.6 NC_006151.1 + 136461 0.68 0.735657
Target:  5'- aGCGCGUgCGCgCCGAccGCgCCGAGAuggGCg -3'
miRNA:   3'- -UGUGUAgGCGgGGCUu-CG-GGCUCU---UG- -5'
29443 3' -57.6 NC_006151.1 + 136156 0.66 0.818626
Target:  5'- gACGCuggCCGCCuuCCGgcGCCucuaCGGGAACc -3'
miRNA:   3'- -UGUGua-GGCGG--GGCuuCGG----GCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 135832 0.67 0.761606
Target:  5'- aGCGCG-CCGCCCCGgcGUcacguucugccucaCCGGGcACg -3'
miRNA:   3'- -UGUGUaGGCGGGGCuuCG--------------GGCUCuUG- -5'
29443 3' -57.6 NC_006151.1 + 135210 0.66 0.843566
Target:  5'- -aGCGUCCGCUCCaGGacGGCCaCGucGGACa -3'
miRNA:   3'- ugUGUAGGCGGGG-CU--UCGG-GCu-CUUG- -5'
29443 3' -57.6 NC_006151.1 + 134422 0.69 0.645461
Target:  5'- aGCugGUgCUGCCCCccgGggGCgCCGAGAc- -3'
miRNA:   3'- -UGugUA-GGCGGGG---CuuCG-GGCUCUug -5'
29443 3' -57.6 NC_006151.1 + 133816 0.66 0.827118
Target:  5'- uGCACGUCCGgguggcguaaCCCaGGGCCaCGAcGAGCa -3'
miRNA:   3'- -UGUGUAGGCg---------GGGcUUCGG-GCU-CUUG- -5'
29443 3' -57.6 NC_006151.1 + 133451 0.67 0.792176
Target:  5'- gGCGCucUUgGCCCCGGucgaGGCCCGcGAGg -3'
miRNA:   3'- -UGUGu-AGgCGGGGCU----UCGGGCuCUUg -5'
29443 3' -57.6 NC_006151.1 + 132629 0.72 0.514892
Target:  5'- uCGCGUCCGCCgUCGgcGCCCGGaccuGGGCc -3'
miRNA:   3'- uGUGUAGGCGG-GGCuuCGGGCU----CUUG- -5'
29443 3' -57.6 NC_006151.1 + 131485 0.67 0.791271
Target:  5'- aGCACGUCCuGCaggugcaCCaGGAGCCCcgcgcggGGGAACg -3'
miRNA:   3'- -UGUGUAGG-CGg------GG-CUUCGGG-------CUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 130689 0.7 0.594578
Target:  5'- gGCGCAggaUGUCCgGggGCCCGAcgGGGCg -3'
miRNA:   3'- -UGUGUag-GCGGGgCuuCGGGCU--CUUG- -5'
29443 3' -57.6 NC_006151.1 + 130635 0.66 0.827118
Target:  5'- uCACGagCGCCgCCGAGGCCgccugcggCGuGAACg -3'
miRNA:   3'- uGUGUagGCGG-GGCUUCGG--------GCuCUUG- -5'
29443 3' -57.6 NC_006151.1 + 130270 0.77 0.257805
Target:  5'- gGCGCG-CgGCCCCGAGGCCgCGGGcGCg -3'
miRNA:   3'- -UGUGUaGgCGGGGCUUCGG-GCUCuUG- -5'
29443 3' -57.6 NC_006151.1 + 130101 0.68 0.696072
Target:  5'- cGCGCuccUCgGCCgUGAAGCCCGGGu-- -3'
miRNA:   3'- -UGUGu--AGgCGGgGCUUCGGGCUCuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.