miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29443 3' -57.6 NC_006151.1 + 79047 1.08 0.002212
Target:  5'- cACACAUCCGCCCCGAAGCCCGAGAACc -3'
miRNA:   3'- -UGUGUAGGCGGGGCUUCGGGCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 88387 0.78 0.21776
Target:  5'- aGCGCGUCCGCggcguccgcggCCgCGAGGCCCGGGAc- -3'
miRNA:   3'- -UGUGUAGGCG-----------GG-GCUUCGGGCUCUug -5'
29443 3' -57.6 NC_006151.1 + 27158 0.78 0.228627
Target:  5'- uCACGUCgGCCCCGAGGCgCCGcgugucGGGGCg -3'
miRNA:   3'- uGUGUAGgCGGGGCUUCG-GGC------UCUUG- -5'
29443 3' -57.6 NC_006151.1 + 122410 0.77 0.251735
Target:  5'- gGCGCucgCCGCCguggacgccgCCGAGGCCCGGGAGg -3'
miRNA:   3'- -UGUGua-GGCGG----------GGCUUCGGGCUCUUg -5'
29443 3' -57.6 NC_006151.1 + 130270 0.77 0.257805
Target:  5'- gGCGCG-CgGCCCCGAGGCCgCGGGcGCg -3'
miRNA:   3'- -UGUGUaGgCGGGGCUUCGG-GCUCuUG- -5'
29443 3' -57.6 NC_006151.1 + 107556 0.76 0.283284
Target:  5'- gGCGCcgCCGCCCgCcAAGCCCGcGGAGCu -3'
miRNA:   3'- -UGUGuaGGCGGG-GcUUCGGGC-UCUUG- -5'
29443 3' -57.6 NC_006151.1 + 32330 0.76 0.296753
Target:  5'- cCGCGUCCccauCUCCGAGGCCCGAGGc- -3'
miRNA:   3'- uGUGUAGGc---GGGGCUUCGGGCUCUug -5'
29443 3' -57.6 NC_006151.1 + 19478 0.75 0.347009
Target:  5'- gGCAgGUagucgccgaugccCCGCUCCGggGCCuCGGGGACg -3'
miRNA:   3'- -UGUgUA-------------GGCGGGGCuuCGG-GCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 8306 0.75 0.355562
Target:  5'- cCGCGUcCCGCCCCGA-GCCCccGGGGCg -3'
miRNA:   3'- uGUGUA-GGCGGGGCUuCGGGc-UCUUG- -5'
29443 3' -57.6 NC_006151.1 + 22843 0.74 0.371491
Target:  5'- aGCGCG-CUGCCCagGAAGCCCaGGAGCa -3'
miRNA:   3'- -UGUGUaGGCGGGg-CUUCGGGcUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 81349 0.74 0.379635
Target:  5'- cCGCcgCCGCgCCCGggGCcCCGGcGGGCg -3'
miRNA:   3'- uGUGuaGGCG-GGGCuuCG-GGCU-CUUG- -5'
29443 3' -57.6 NC_006151.1 + 107849 0.74 0.396279
Target:  5'- -gGCGaCgGCCCCGgcGCCCGAGAc- -3'
miRNA:   3'- ugUGUaGgCGGGGCuuCGGGCUCUug -5'
29443 3' -57.6 NC_006151.1 + 56226 0.74 0.404776
Target:  5'- cCugGUgCGCCCCGAGGaCCCGAcGGAg -3'
miRNA:   3'- uGugUAgGCGGGGCUUC-GGGCU-CUUg -5'
29443 3' -57.6 NC_006151.1 + 96604 0.73 0.413386
Target:  5'- gGCGCGggCGCgCCGAcgucguGCCCGAGGGCg -3'
miRNA:   3'- -UGUGUagGCGgGGCUu-----CGGGCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 105292 0.73 0.422109
Target:  5'- cGCGCggCCGCgCCGgcGCcuCCGAGGACg -3'
miRNA:   3'- -UGUGuaGGCGgGGCuuCG--GGCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 107613 0.73 0.439881
Target:  5'- gGCGCcgCCGCCCgCcAAGCCCGuGGAg -3'
miRNA:   3'- -UGUGuaGGCGGG-GcUUCGGGCuCUUg -5'
29443 3' -57.6 NC_006151.1 + 106585 0.73 0.439881
Target:  5'- gGCGCugugGUCCGCCCUGcAGCCgGAGGcgaACg -3'
miRNA:   3'- -UGUG----UAGGCGGGGCuUCGGgCUCU---UG- -5'
29443 3' -57.6 NC_006151.1 + 5933 0.73 0.439881
Target:  5'- gGCcCGgagCCGgCCCGGgaccggGGCCCGAGGACg -3'
miRNA:   3'- -UGuGUa--GGCgGGGCU------UCGGGCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 52186 0.73 0.448925
Target:  5'- cGCGCGaacgCgGCCCCGAagAGCUCgGAGAGCg -3'
miRNA:   3'- -UGUGUa---GgCGGGGCU--UCGGG-CUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 66882 0.73 0.458071
Target:  5'- gGCGCGcCCgGCCCCGc-GCCgGAGGACg -3'
miRNA:   3'- -UGUGUaGG-CGGGGCuuCGGgCUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.