miRNA display CGI


Results 21 - 40 of 164 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29443 3' -57.6 NC_006151.1 + 82395 0.72 0.467316
Target:  5'- cCACGagcUCCGCgCCCGAGGgcggcCCCGAGAGg -3'
miRNA:   3'- uGUGU---AGGCG-GGGCUUC-----GGGCUCUUg -5'
29443 3' -57.6 NC_006151.1 + 5626 0.72 0.476656
Target:  5'- gGCGCcgCCGCCgCCG-GGCgCCGAGAc- -3'
miRNA:   3'- -UGUGuaGGCGG-GGCuUCG-GGCUCUug -5'
29443 3' -57.6 NC_006151.1 + 89517 0.72 0.486087
Target:  5'- gGCGCAgcggacguggUCCGCCUCGAgcAGCgCCGAGGc- -3'
miRNA:   3'- -UGUGU----------AGGCGGGGCU--UCG-GGCUCUug -5'
29443 3' -57.6 NC_006151.1 + 52360 0.72 0.495607
Target:  5'- uCGuCGUCCGCcggcgcgccCCCGggGCCCGcgGGGGCg -3'
miRNA:   3'- uGU-GUAGGCG---------GGGCuuCGGGC--UCUUG- -5'
29443 3' -57.6 NC_006151.1 + 75002 0.72 0.511979
Target:  5'- cGCGCAcCUGCCCCaucaccuggggcacGGcgaagGGCCCGGGGACg -3'
miRNA:   3'- -UGUGUaGGCGGGG--------------CU-----UCGGGCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 11212 0.72 0.514892
Target:  5'- gGCGCGUCCGggaaggcuucUCCCG-GGCCgCGAGGGCc -3'
miRNA:   3'- -UGUGUAGGC----------GGGGCuUCGG-GCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 132629 0.72 0.514892
Target:  5'- uCGCGUCCGCCgUCGgcGCCCGGaccuGGGCc -3'
miRNA:   3'- uGUGUAGGCGG-GGCuuCGGGCU----CUUG- -5'
29443 3' -57.6 NC_006151.1 + 22305 0.71 0.534474
Target:  5'- cCACGUCCGCgCCGAGcgucGUCCGGGcGACc -3'
miRNA:   3'- uGUGUAGGCGgGGCUU----CGGGCUC-UUG- -5'
29443 3' -57.6 NC_006151.1 + 21887 0.71 0.534474
Target:  5'- gUugAaCCGCCCCGGAGCCaccauGAGCa -3'
miRNA:   3'- uGugUaGGCGGGGCUUCGGgcu--CUUG- -5'
29443 3' -57.6 NC_006151.1 + 2503 0.71 0.544365
Target:  5'- gGCGCccgcgucaaaGUCCGgguCCCCG-AGCCCGAGcGCg -3'
miRNA:   3'- -UGUG----------UAGGC---GGGGCuUCGGGCUCuUG- -5'
29443 3' -57.6 NC_006151.1 + 9885 0.71 0.544365
Target:  5'- gGCGCuUCCuCCCCGGcGGUCCGGGAAg -3'
miRNA:   3'- -UGUGuAGGcGGGGCU-UCGGGCUCUUg -5'
29443 3' -57.6 NC_006151.1 + 37395 0.71 0.544365
Target:  5'- cCGCGUCCGCUaCGGcGGCgCCGGGGACu -3'
miRNA:   3'- uGUGUAGGCGGgGCU-UCG-GGCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 2172 0.71 0.554314
Target:  5'- cGC-CGgggCCgGCCCCGgcGCCCGAGGc- -3'
miRNA:   3'- -UGuGUa--GG-CGGGGCuuCGGGCUCUug -5'
29443 3' -57.6 NC_006151.1 + 86088 0.71 0.554314
Target:  5'- cGCGCcgCCGCCgCCauGggGCCCGuGuACg -3'
miRNA:   3'- -UGUGuaGGCGG-GG--CuuCGGGCuCuUG- -5'
29443 3' -57.6 NC_006151.1 + 49152 0.71 0.554314
Target:  5'- cCACggCUGCCUgGAGGCCUGGGcGCg -3'
miRNA:   3'- uGUGuaGGCGGGgCUUCGGGCUCuUG- -5'
29443 3' -57.6 NC_006151.1 + 76918 0.71 0.574364
Target:  5'- -gGCAUCCgGUCCCGGGccacguuccgcGCCaCGAGGACg -3'
miRNA:   3'- ugUGUAGG-CGGGGCUU-----------CGG-GCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 31024 0.71 0.574364
Target:  5'- cCGCcgCgGCCCuCGcGGCCCGGGAGa -3'
miRNA:   3'- uGUGuaGgCGGG-GCuUCGGGCUCUUg -5'
29443 3' -57.6 NC_006151.1 + 57901 0.7 0.584454
Target:  5'- gGCGCAggCCGCagcucaCG-GGCCCGAGGGCg -3'
miRNA:   3'- -UGUGUa-GGCGgg----GCuUCGGGCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 4179 0.7 0.584454
Target:  5'- aGCGCggCCGucaccuCCUCGAggcaggcgGGCCCGAGGGCg -3'
miRNA:   3'- -UGUGuaGGC------GGGGCU--------UCGGGCUCUUG- -5'
29443 3' -57.6 NC_006151.1 + 48776 0.7 0.584454
Target:  5'- gACGCcUCCGCCCCGcccCCCGAccccgGGGCg -3'
miRNA:   3'- -UGUGuAGGCGGGGCuucGGGCU-----CUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.