miRNA display CGI


Results 41 - 60 of 620 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29443 5' -65.7 NC_006151.1 + 68981 0.66 0.502562
Target:  5'- aCGCCggCCagcaGCGCGCGCacgcaGGCGuugcggaAGCGCu -3'
miRNA:   3'- gGCGG--GGg---CGCGCGCGc----UCGC-------UCGCG- -5'
29443 5' -65.7 NC_006151.1 + 95928 0.66 0.502562
Target:  5'- gUCGCCCgaGgGCGUGCGguugaagcucugcAGCGAGaGCc -3'
miRNA:   3'- -GGCGGGggCgCGCGCGC-------------UCGCUCgCG- -5'
29443 5' -65.7 NC_006151.1 + 121332 0.66 0.502562
Target:  5'- gCCGCCgagCUgGUGCGCGaccuCGAGggccagaCGGGCGCg -3'
miRNA:   3'- -GGCGG---GGgCGCGCGC----GCUC-------GCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 130643 0.66 0.502562
Target:  5'- gCCGCCgaggccgCCUGCG-GCGUGAacgucagugcccGCGGGgCGCg -3'
miRNA:   3'- -GGCGG-------GGGCGCgCGCGCU------------CGCUC-GCG- -5'
29443 5' -65.7 NC_006151.1 + 135948 0.66 0.502562
Target:  5'- -aGCCCCuCGCG-GCGCGGGacguccuCGAG-GCc -3'
miRNA:   3'- ggCGGGG-GCGCgCGCGCUC-------GCUCgCG- -5'
29443 5' -65.7 NC_006151.1 + 70123 0.66 0.502562
Target:  5'- aCGCCCgCGCGC-CGCaggaggggguccGGGacgaugacgugcaCGAGCGCg -3'
miRNA:   3'- gGCGGGgGCGCGcGCG------------CUC-------------GCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 91516 0.66 0.500767
Target:  5'- cCCgGCCUCgCugaagacgaggaagGCGUGCGCGAG-GuGCGCg -3'
miRNA:   3'- -GG-CGGGG-G--------------CGCGCGCGCUCgCuCGCG- -5'
29443 5' -65.7 NC_006151.1 + 24424 0.66 0.49987
Target:  5'- cCCGCgCCCCagacgucgaccuugGUgucguagcggucGCGCGCGAGCaccucggGGGCGUu -3'
miRNA:   3'- -GGCG-GGGG--------------CG------------CGCGCGCUCG-------CUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 140362 0.66 0.494506
Target:  5'- aUCGCCCgCGuCGUcgaGCGCGGcuCGAGCuGCg -3'
miRNA:   3'- -GGCGGGgGC-GCG---CGCGCUc-GCUCG-CG- -5'
29443 5' -65.7 NC_006151.1 + 86489 0.66 0.494506
Target:  5'- -gGCgCUCUGCGUGauCGGGCG-GCGCg -3'
miRNA:   3'- ggCG-GGGGCGCGCgcGCUCGCuCGCG- -5'
29443 5' -65.7 NC_006151.1 + 19050 0.66 0.494506
Target:  5'- -gGUCCaCCGgGCGCaggcacuCGGGCGcGCGCg -3'
miRNA:   3'- ggCGGG-GGCgCGCGc------GCUCGCuCGCG- -5'
29443 5' -65.7 NC_006151.1 + 44452 0.66 0.494506
Target:  5'- -aGCUCUCGCGaCGCGaugggGGGUGAGgGUg -3'
miRNA:   3'- ggCGGGGGCGC-GCGCg----CUCGCUCgCG- -5'
29443 5' -65.7 NC_006151.1 + 75425 0.66 0.494506
Target:  5'- -gGCCCggCGUGgGCGCGAagcugccgGCGuGGCGCg -3'
miRNA:   3'- ggCGGGg-GCGCgCGCGCU--------CGC-UCGCG- -5'
29443 5' -65.7 NC_006151.1 + 100841 0.66 0.494506
Target:  5'- gCCGCUCUCGgcgagcgucaaCGUGCGCGAcUGGGcCGCc -3'
miRNA:   3'- -GGCGGGGGC-----------GCGCGCGCUcGCUC-GCG- -5'
29443 5' -65.7 NC_006151.1 + 121644 0.66 0.494506
Target:  5'- gCCuCUCUCGCG-GCGgaCGGGCGGGCGg -3'
miRNA:   3'- -GGcGGGGGCGCgCGC--GCUCGCUCGCg -5'
29443 5' -65.7 NC_006151.1 + 59655 0.66 0.494506
Target:  5'- gCGCUCgCUGCGCaGCGCcucGGgGAcGCGCg -3'
miRNA:   3'- gGCGGG-GGCGCG-CGCGc--UCgCU-CGCG- -5'
29443 5' -65.7 NC_006151.1 + 96800 0.66 0.494506
Target:  5'- cCCGagCCgGgGCGCGCGGGCuuuuAGCGg -3'
miRNA:   3'- -GGCggGGgCgCGCGCGCUCGc---UCGCg -5'
29443 5' -65.7 NC_006151.1 + 111005 0.66 0.494506
Target:  5'- uCUGCagCCCCGuCGCGCGguUGAGCcgGAGCa- -3'
miRNA:   3'- -GGCG--GGGGC-GCGCGC--GCUCG--CUCGcg -5'
29443 5' -65.7 NC_006151.1 + 135153 0.66 0.494506
Target:  5'- cCCaG-CCCgGCGgGCGCGgcccGGaCGGGCGCc -3'
miRNA:   3'- -GG-CgGGGgCGCgCGCGC----UC-GCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 28157 0.66 0.493614
Target:  5'- gUCGaUCCCCGUcgGCGUcguugggGCG-GCGAGUGCc -3'
miRNA:   3'- -GGC-GGGGGCG--CGCG-------CGCuCGCUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.