miRNA display CGI


Results 21 - 40 of 620 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29443 5' -65.7 NC_006151.1 + 139780 0.66 0.512485
Target:  5'- gCGCCCCC-CGauCGUcugucggaGAGCGcGCGCg -3'
miRNA:   3'- gGCGGGGGcGCgcGCG--------CUCGCuCGCG- -5'
29443 5' -65.7 NC_006151.1 + 127723 0.66 0.512485
Target:  5'- -gGCCCCgGCGUccccGuCGCGGGCGGGa-- -3'
miRNA:   3'- ggCGGGGgCGCG----C-GCGCUCGCUCgcg -5'
29443 5' -65.7 NC_006151.1 + 96621 0.66 0.511579
Target:  5'- gUCGUgCCCgaggGCGCGCaGCGccucgagcucggcGGCGAGgGCc -3'
miRNA:   3'- -GGCGgGGG----CGCGCG-CGC-------------UCGCUCgCG- -5'
29443 5' -65.7 NC_006151.1 + 85221 0.66 0.50977
Target:  5'- -gGUCCCCGaguaccuggaCGCGCugaGCcaggcgcuggccgaGGGCGGGCGCa -3'
miRNA:   3'- ggCGGGGGC----------GCGCG---CG--------------CUCGCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 69889 0.66 0.507062
Target:  5'- gCGCCCaCGCGCaGCGCcgccGucgugaagccgucaaAGUGGGCGCc -3'
miRNA:   3'- gGCGGGgGCGCG-CGCG----C---------------UCGCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 112766 0.66 0.507062
Target:  5'- gCCGCCUucaguUCGUGUaCGUGAuggacaagcacuuucGCGGGCGCg -3'
miRNA:   3'- -GGCGGG-----GGCGCGcGCGCU---------------CGCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 33288 0.66 0.50436
Target:  5'- cCCGaCCCUuccccggggcgCGCGCGCGUGGGaccgggaccgggacaGGGgGCg -3'
miRNA:   3'- -GGC-GGGG-----------GCGCGCGCGCUCg--------------CUCgCG- -5'
29443 5' -65.7 NC_006151.1 + 128564 0.66 0.50346
Target:  5'- gCCGCCCaaagaGCGC-CuCGGGCGAcaucgucucGCGCg -3'
miRNA:   3'- -GGCGGGgg---CGCGcGcGCUCGCU---------CGCG- -5'
29443 5' -65.7 NC_006151.1 + 5081 0.66 0.50346
Target:  5'- -gGCCgCgGgGC-CGCG-GCGGGCGCc -3'
miRNA:   3'- ggCGGgGgCgCGcGCGCuCGCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 30621 0.66 0.50346
Target:  5'- uCgGCgUgCGCGCuGUGCGGGUGGGUGg -3'
miRNA:   3'- -GgCGgGgGCGCG-CGCGCUCGCUCGCg -5'
29443 5' -65.7 NC_006151.1 + 89026 0.66 0.50346
Target:  5'- gCCGCUCCCGgcacacgaUGCGCuuGCGccCGuGCGCg -3'
miRNA:   3'- -GGCGGGGGC--------GCGCG--CGCucGCuCGCG- -5'
29443 5' -65.7 NC_006151.1 + 90630 0.66 0.50346
Target:  5'- gCgGCCCgCGgGCGCuugGCGA-UGGGCGUg -3'
miRNA:   3'- -GgCGGGgGCgCGCG---CGCUcGCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 115795 0.66 0.50346
Target:  5'- gCGCUCgucgggaUGCGCGCGCGgauGGCcuuGCGCa -3'
miRNA:   3'- gGCGGGg------GCGCGCGCGC---UCGcu-CGCG- -5'
29443 5' -65.7 NC_006151.1 + 13389 0.66 0.50346
Target:  5'- cCCGCCUCCGgGgaCGCGCcggccaauggggGAGcCGGGCccGCg -3'
miRNA:   3'- -GGCGGGGGCgC--GCGCG------------CUC-GCUCG--CG- -5'
29443 5' -65.7 NC_006151.1 + 32561 0.66 0.50346
Target:  5'- cCCGUCuCCCGgGCaccCGCGGcCGGGCGg -3'
miRNA:   3'- -GGCGG-GGGCgCGc--GCGCUcGCUCGCg -5'
29443 5' -65.7 NC_006151.1 + 36608 0.66 0.50346
Target:  5'- gCCuCCCCCGC-CGC-CGGGCcggucucGGCGCc -3'
miRNA:   3'- -GGcGGGGGCGcGCGcGCUCGc------UCGCG- -5'
29443 5' -65.7 NC_006151.1 + 68417 0.66 0.50346
Target:  5'- cCCGCCCCCcuCGCcccgcuacaCGCG-GCGgcacaGGCGCu -3'
miRNA:   3'- -GGCGGGGGc-GCGc--------GCGCuCGC-----UCGCG- -5'
29443 5' -65.7 NC_006151.1 + 69479 0.66 0.50346
Target:  5'- aCCGUCgCCGC-CGCcuCGAGCGcccccGCGCc -3'
miRNA:   3'- -GGCGGgGGCGcGCGc-GCUCGCu----CGCG- -5'
29443 5' -65.7 NC_006151.1 + 142326 0.66 0.50346
Target:  5'- -gGCCCgCGCGCuCGCG-GCGccCGCu -3'
miRNA:   3'- ggCGGGgGCGCGcGCGCuCGCucGCG- -5'
29443 5' -65.7 NC_006151.1 + 135948 0.66 0.502562
Target:  5'- -aGCCCCuCGCG-GCGCGGGacguccuCGAG-GCc -3'
miRNA:   3'- ggCGGGG-GCGCgCGCGCUC-------GCUCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.