miRNA display CGI


Results 21 - 40 of 620 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29443 5' -65.7 NC_006151.1 + 118344 0.8 0.061229
Target:  5'- cCCGCCCUcuCGCGCGCcuGCGAgGCGGcGCGCg -3'
miRNA:   3'- -GGCGGGG--GCGCGCG--CGCU-CGCU-CGCG- -5'
29443 5' -65.7 NC_006151.1 + 89154 0.8 0.062782
Target:  5'- aCCGCgCCCGCcuCGgGCGAgGCGGGCGCg -3'
miRNA:   3'- -GGCGgGGGCGc-GCgCGCU-CGCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 69517 0.8 0.062782
Target:  5'- uCCGCCgCCGCGcCGCGCGAG--GGCGCc -3'
miRNA:   3'- -GGCGGgGGCGC-GCGCGCUCgcUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 55415 0.8 0.064373
Target:  5'- -aGgCCCUGCGCGcCGCGcaGGCGGGCGCg -3'
miRNA:   3'- ggCgGGGGCGCGC-GCGC--UCGCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 111141 0.79 0.067671
Target:  5'- gCGCCCCCGCGCGCGCGGcCGccuuuaaCGCa -3'
miRNA:   3'- gGCGGGGGCGCGCGCGCUcGCuc-----GCG- -5'
29443 5' -65.7 NC_006151.1 + 115189 0.79 0.067671
Target:  5'- gCGCUCCagccaGCGCGcCGCGGGCGcGCGCg -3'
miRNA:   3'- gGCGGGGg----CGCGC-GCGCUCGCuCGCG- -5'
29443 5' -65.7 NC_006151.1 + 139816 0.79 0.069381
Target:  5'- gCCGUCUCCGCGacgcaCGCGCGGGUcGGCGCg -3'
miRNA:   3'- -GGCGGGGGCGC-----GCGCGCUCGcUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 98352 0.79 0.069381
Target:  5'- aCGCCCgCggGCGUGCGCGGGCucuGGGCGCg -3'
miRNA:   3'- gGCGGGgG--CGCGCGCGCUCG---CUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 100898 0.79 0.069381
Target:  5'- gCGCCgCgGCGCGCGCGcgcccgacgacGCGAGCGCg -3'
miRNA:   3'- gGCGGgGgCGCGCGCGCu----------CGCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 52744 0.79 0.071133
Target:  5'- aCGCCCugCUGCGCGCGCGccucgcAGCGcAGCGCc -3'
miRNA:   3'- gGCGGG--GGCGCGCGCGC------UCGC-UCGCG- -5'
29443 5' -65.7 NC_006151.1 + 103764 0.79 0.072927
Target:  5'- gCGCCgCgGCGCuGCGCGAGUcgGAGCGCu -3'
miRNA:   3'- gGCGGgGgCGCG-CGCGCUCG--CUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 89234 0.79 0.074764
Target:  5'- gCCGCCCCCGuUGgGCGuCGuGuCGAGCGCc -3'
miRNA:   3'- -GGCGGGGGC-GCgCGC-GCuC-GCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 101653 0.79 0.076646
Target:  5'- gCCGUgCCCGCGCucuacgGCGUGGGCGAGaCGUa -3'
miRNA:   3'- -GGCGgGGGCGCG------CGCGCUCGCUC-GCG- -5'
29443 5' -65.7 NC_006151.1 + 82613 0.78 0.078573
Target:  5'- -gGCCCgCGCGCGgGCGccgcGGUGGGCGCg -3'
miRNA:   3'- ggCGGGgGCGCGCgCGC----UCGCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 69113 0.78 0.078573
Target:  5'- aCCaGCUCCCGcCGCGCcuccGCGGGCaGGGCGCg -3'
miRNA:   3'- -GG-CGGGGGC-GCGCG----CGCUCG-CUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 85626 0.78 0.080546
Target:  5'- gCCGCCgCCGCGCgGCGCcAGCGGGgaCGCg -3'
miRNA:   3'- -GGCGGgGGCGCG-CGCGcUCGCUC--GCG- -5'
29443 5' -65.7 NC_006151.1 + 128212 0.78 0.080546
Target:  5'- gCGCCCCagGCGUGCGaCGAGCucguGGGCGCc -3'
miRNA:   3'- gGCGGGGg-CGCGCGC-GCUCG----CUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 32063 0.78 0.080546
Target:  5'- gCCGCCgCCCGCGC-CGCGAccgGCGAaCGCa -3'
miRNA:   3'- -GGCGG-GGGCGCGcGCGCU---CGCUcGCG- -5'
29443 5' -65.7 NC_006151.1 + 11300 0.78 0.081956
Target:  5'- cCCGCCCgcucucccgggccgCCGCGauacCGCGCGGGCGAuaccGCGCg -3'
miRNA:   3'- -GGCGGG--------------GGCGC----GCGCGCUCGCU----CGCG- -5'
29443 5' -65.7 NC_006151.1 + 127795 0.78 0.084636
Target:  5'- cCCGCCgCCGCGCGCGgGGGCGcgaGGUccuuGCg -3'
miRNA:   3'- -GGCGGgGGCGCGCGCgCUCGC---UCG----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.