miRNA display CGI


Results 21 - 40 of 620 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29443 5' -65.7 NC_006151.1 + 4506 0.7 0.313639
Target:  5'- gCGCUCaCCGCGUGCGgcaGGGCccaGAGCGg -3'
miRNA:   3'- gGCGGG-GGCGCGCGCg--CUCG---CUCGCg -5'
29443 5' -65.7 NC_006151.1 + 4788 0.71 0.235776
Target:  5'- -gGCCCggCCGCG-GCGCGguAGCGGGcCGCg -3'
miRNA:   3'- ggCGGG--GGCGCgCGCGC--UCGCUC-GCG- -5'
29443 5' -65.7 NC_006151.1 + 4999 0.68 0.40948
Target:  5'- gCGCuUCCUGCGCGgGggcCGGGCGGGCu- -3'
miRNA:   3'- gGCG-GGGGCGCGCgC---GCUCGCUCGcg -5'
29443 5' -65.7 NC_006151.1 + 5081 0.66 0.50346
Target:  5'- -gGCCgCgGgGC-CGCG-GCGGGCGCc -3'
miRNA:   3'- ggCGGgGgCgCGcGCGCuCGCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 5118 0.78 0.084636
Target:  5'- gCGgCCCgGCGCGgGCGAGUGgGGCGCc -3'
miRNA:   3'- gGCgGGGgCGCGCgCGCUCGC-UCGCG- -5'
29443 5' -65.7 NC_006151.1 + 5234 0.67 0.459452
Target:  5'- gCCGagCgCCGCGCG-GCGgcGGCGGGgGCc -3'
miRNA:   3'- -GGCg-GgGGCGCGCgCGC--UCGCUCgCG- -5'
29443 5' -65.7 NC_006151.1 + 5351 0.69 0.355658
Target:  5'- gCGCCCUCuccgGCGCgGCGCcGGCGGG-GCu -3'
miRNA:   3'- gGCGGGGG----CGCG-CGCGcUCGCUCgCG- -5'
29443 5' -65.7 NC_006151.1 + 5632 0.66 0.475943
Target:  5'- gCCGCCgCCGgGCGCcgagaccggcccgGCG-GCGGGgGa -3'
miRNA:   3'- -GGCGGgGGCgCGCG-------------CGCuCGCUCgCg -5'
29443 5' -65.7 NC_006151.1 + 5684 0.69 0.334165
Target:  5'- -gGCCCCCGC-CGUGCcGGCGcuGCGg -3'
miRNA:   3'- ggCGGGGGCGcGCGCGcUCGCu-CGCg -5'
29443 5' -65.7 NC_006151.1 + 6384 0.67 0.437389
Target:  5'- uCUGCCUgagcgaggccgggcgCCGaGCGCGgaGAGCGGGCGg -3'
miRNA:   3'- -GGCGGG---------------GGCgCGCGCg-CUCGCUCGCg -5'
29443 5' -65.7 NC_006151.1 + 7016 0.71 0.243315
Target:  5'- uCCgGCCCCCGCGgcggccaucucggcuCGCcCGGGCcaauGGGCGCg -3'
miRNA:   3'- -GG-CGGGGGCGC---------------GCGcGCUCG----CUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 7146 0.7 0.307013
Target:  5'- uCCGaaaauCCCUCGCGCGgGC--GCGAGgCGCa -3'
miRNA:   3'- -GGC-----GGGGGCGCGCgCGcuCGCUC-GCG- -5'
29443 5' -65.7 NC_006151.1 + 7192 0.69 0.355658
Target:  5'- cCCaCCCCCGUG-GUGCuAGCGAGC-Ca -3'
miRNA:   3'- -GGcGGGGGCGCgCGCGcUCGCUCGcG- -5'
29443 5' -65.7 NC_006151.1 + 7648 0.73 0.183164
Target:  5'- cCCGCgCCUCGCGCucgGCGCGcGCuccgaGGGCGCc -3'
miRNA:   3'- -GGCG-GGGGCGCG---CGCGCuCG-----CUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 7990 0.72 0.22028
Target:  5'- uCCGCgguaCCUCGgGCGgGCGGGaggGGGCGCg -3'
miRNA:   3'- -GGCG----GGGGCgCGCgCGCUCg--CUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 8127 0.71 0.269503
Target:  5'- gCGCggaCCCCGCccgGUGgGgGGGCGGGUGCa -3'
miRNA:   3'- gGCG---GGGGCG---CGCgCgCUCGCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 8289 0.71 0.252176
Target:  5'- gUGUCCCCGCGCGgGCGccGCGuccCGCc -3'
miRNA:   3'- gGCGGGGGCGCGCgCGCu-CGCuc-GCG- -5'
29443 5' -65.7 NC_006151.1 + 8321 0.76 0.1252
Target:  5'- -aGCCCCCGgGgCGCGCGGGCcucGAucGCGCc -3'
miRNA:   3'- ggCGGGGGCgC-GCGCGCUCG---CU--CGCG- -5'
29443 5' -65.7 NC_006151.1 + 8956 0.72 0.210439
Target:  5'- cCCgGUCCCaCGCGCGCGCGccccgggaagGGuCGGGCGa -3'
miRNA:   3'- -GG-CGGGG-GCGCGCGCGC----------UC-GCUCGCg -5'
29443 5' -65.7 NC_006151.1 + 9035 0.69 0.341223
Target:  5'- cCCGCCCgCCGgggcgcccCGCGUGCuccGgGGGCGCc -3'
miRNA:   3'- -GGCGGG-GGC--------GCGCGCGcu-CgCUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.