miRNA display CGI


Results 1 - 20 of 620 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29443 5' -65.7 NC_006151.1 + 8 0.67 0.417574
Target:  5'- cCCGCuCCCCGgGgGcCGCGAaaaaaGgGGGCGg -3'
miRNA:   3'- -GGCG-GGGGCgCgC-GCGCU-----CgCUCGCg -5'
29443 5' -65.7 NC_006151.1 + 703 0.69 0.354926
Target:  5'- cCUGCCCCUuccgucgcaccggGgGUcCGCGGGCGGGgGCu -3'
miRNA:   3'- -GGCGGGGG-------------CgCGcGCGCUCGCUCgCG- -5'
29443 5' -65.7 NC_006151.1 + 2197 0.7 0.277912
Target:  5'- -gGCCCCCGCGgGCcggugggucuccacgGCGcccccGGCGgcGGCGCg -3'
miRNA:   3'- ggCGGGGGCGCgCG---------------CGC-----UCGC--UCGCG- -5'
29443 5' -65.7 NC_006151.1 + 2468 0.68 0.378105
Target:  5'- -aGCCCCCaGCGguuggcCGCGCGgugcccgaaGGCG-GCGCc -3'
miRNA:   3'- ggCGGGGG-CGC------GCGCGC---------UCGCuCGCG- -5'
29443 5' -65.7 NC_006151.1 + 2523 0.67 0.459452
Target:  5'- -gGUCCCCGagcccgaGCGCG-GAGCGcuGGCGg -3'
miRNA:   3'- ggCGGGGGCg------CGCGCgCUCGC--UCGCg -5'
29443 5' -65.7 NC_006151.1 + 2692 0.67 0.434049
Target:  5'- cUCGgCCCCGgG-GUGCaGGCGGGCGa -3'
miRNA:   3'- -GGCgGGGGCgCgCGCGcUCGCUCGCg -5'
29443 5' -65.7 NC_006151.1 + 2916 0.68 0.370518
Target:  5'- gCCGgCgCCGCGcCGCGcCGAgccGCGAGCa- -3'
miRNA:   3'- -GGCgGgGGCGC-GCGC-GCU---CGCUCGcg -5'
29443 5' -65.7 NC_006151.1 + 3110 0.73 0.187482
Target:  5'- -gGCCgCCGCG-GCGCGGGUcccaggccGGGCGCg -3'
miRNA:   3'- ggCGGgGGCGCgCGCGCUCG--------CUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 3265 0.68 0.370518
Target:  5'- gCGCCgCgGCGCGCgGCGA-UGuGCGCc -3'
miRNA:   3'- gGCGGgGgCGCGCG-CGCUcGCuCGCG- -5'
29443 5' -65.7 NC_006151.1 + 3447 0.71 0.261879
Target:  5'- gCCGCCgUCGgGCGCgggguGCucgggcaugggcccGAGCGGGCGCc -3'
miRNA:   3'- -GGCGGgGGCgCGCG-----CG--------------CUCGCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 3627 0.68 0.401485
Target:  5'- gCCGUCCCCGCGgagggcCGCGCcGGaGAGCc- -3'
miRNA:   3'- -GGCGGGGGCGC------GCGCGcUCgCUCGcg -5'
29443 5' -65.7 NC_006151.1 + 3672 0.75 0.12826
Target:  5'- gCCGUCCCCgGgGCG-GCGGGCcccGGGCGCg -3'
miRNA:   3'- -GGCGGGGG-CgCGCgCGCUCG---CUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 3874 0.68 0.40948
Target:  5'- gCGCCCgCCGC-CGC-CG-GCGccGGCGCu -3'
miRNA:   3'- gGCGGG-GGCGcGCGcGCuCGC--UCGCG- -5'
29443 5' -65.7 NC_006151.1 + 3961 0.67 0.442427
Target:  5'- -gGCCCgggCCGCGCG-GCGgccucGGCGAGCcgGCc -3'
miRNA:   3'- ggCGGG---GGCGCGCgCGC-----UCGCUCG--CG- -5'
29443 5' -65.7 NC_006151.1 + 4041 0.72 0.205661
Target:  5'- gCGgCCUCGCGgGCGCGGGCcccguccacgcuGuAGCGCa -3'
miRNA:   3'- gGCgGGGGCGCgCGCGCUCG------------C-UCGCG- -5'
29443 5' -65.7 NC_006151.1 + 4087 0.67 0.434049
Target:  5'- gCGCCaCgGUGCGgGCGA-CGAGgGCg -3'
miRNA:   3'- gGCGGgGgCGCGCgCGCUcGCUCgCG- -5'
29443 5' -65.7 NC_006151.1 + 4145 0.73 0.174791
Target:  5'- gCCgGCCCCggggaucgcguCGCGgaGCGCGAGC-AGCGCg -3'
miRNA:   3'- -GG-CGGGG-----------GCGCg-CGCGCUCGcUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 4209 0.75 0.131389
Target:  5'- -gGCCCgagggcggCCGgG-GCGCGGGCGGGCGCg -3'
miRNA:   3'- ggCGGG--------GGCgCgCGCGCUCGCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 4325 0.67 0.433216
Target:  5'- gCgGCCgggCUGCGCggcggcgaaggcgGCGCGGacGCGGGCGCa -3'
miRNA:   3'- -GgCGGg--GGCGCG-------------CGCGCU--CGCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 4383 0.69 0.348387
Target:  5'- gUCGCCUCCcCG-GCGCGGGgGuccgcGGCGCg -3'
miRNA:   3'- -GGCGGGGGcGCgCGCGCUCgC-----UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.